BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475885
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67800.2 | Symbols: | Copine (Calcium-dependent phospholipi... 2475 0.0
> AT1G67800.2 | Symbols: | Copine (Calcium-dependent phospholipid-binding
protein) family | chr1:25420780-25423403 REVERSE
LENGTH=1717
Length=1717
Score = 2475 bits (1340), Expect = 0.0
Identities = 1558/1662 (94%), Gaps = 20/1662 (1%)
Strand=Plus/Plus
Query 5 AAGAAGGGAACTTTGTTGTTGGGTTGATCTGAATTTTTGATTTATGCTTCAAGTGTTGCA 64
|||||||||||||||||||||| || |||||| ||||||| ||||||| ||||||||||
Sbjct 64 AAGAAGGGAACTTTGTTGTTGGCTTAATCTGATTTTTTGACATATGCTTGAAGTGTTGCA 123
Query 65 GGCGATTGTTTTGTTTATCTTGTTTTGGGTTTGGTTGTCTTGGATGGGAGGAAGTAGCTC 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GGCGATTGTTTTGTTTATCTTGTTTTGGGTTTGGTTGTCTTGGATGGGAGGAAGTAGCTC 183
Query 125 AAAAGAGT--CGAATA-GAGGTGAAAGTAGTCGAAGGTATGAACGTAGTGTGTCTGGTAG 181
||||||| | | | |||||| |||| |||| ||||||||||||||||||||||| ||
Sbjct 184 TAAAGAGTCACCTAGAGGAGGTGGAAGTGGTCGTAGGTATGAACGTAGTGTGTCTGGGAG 243
Query 182 CTCTTCTTATTCGTCTGCTTGGGACCAGAACAGCTATTATCAGACACCAAACCATCCATC 241
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 244 CTCATCTTATTCGTCTGCTTGGGACCAGAGCAGCTATTATCAGACACCAAACCATCCATC 303
Query 242 TGCGTCTCCTGTTTCCTCCTACAATTCTGGGAGACAAACTCCGAAGAATCTTGAGAGGAA 301
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 304 TGCGTCTCCTGTTTCATCCTATAATTCTGGGAGACAAACACCGAAGAATCTTGAGAGGAA 363
Query 302 GTATTCACGGATTGCTGATAACTACCGTTCCATCGATGAGGTTACCGCTGCTCTTTCACA 361
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 364 GTATTCACGGATTGCTGATAACTACCGTTCCATTGATGAGGTTACCGCTGCTCTTTCACA 423
Query 362 TGCCGGTTTGGAGTCCTCGAATCTCATTGTTGGTATAGATGTCACAAAGAGCAATGAGTG 421
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 424 TGCCGGTTTGGAGTCCTCGAATCTCATTGTTGGTATAGATGTCACCAAGAGCAACGAGTG 483
Query 422 GACAGGGGCAAGATCATTTGGTAGGAAGAGTCTGCATTACATTGGAACAACTCCAAACCC 481
||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 484 GACAGGGGCGAGATCATTTGGTAGGAAGAGTCTGCATTTCATTGGAACTACTCCAAACCC 543
Query 482 TTACCAGCAAGCTATTTCCATCATTGGAAAGACTTTGTCAGTTTTTGATGAGGATAATTT 541
||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 544 TTATCAACAAGCTATTTCCATCATTGGAAAGACTTTATCGGTTTTTGATGAGGATAATTT 603
Query 542 GATCCCCTGTTATGGATTCGGAGATGCTACAACCCATGATCAGGATGTCTTCAGTTTCAA 601
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 604 GATCCCCTGTTATGGATTTGGAGATGCTACAACTCATGATCAGGATGTCTTCAGTTTCAA 663
Query 602 TCCCAATGATACATTTTGTAACGGGTTTGAAGAAGTTCTCATGTGTTACAGAGAGATTGT 661
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TCCCAATGATACATATTGTAACGGGTTTGAAGAAGTTCTCATGTGTTACAGAGAGATTGT 723
Query 662 TCCGCAGCTCCGTCTTTCAGGTCCGACATCTTTTGCACCCATCATTGAAAGGGCCATGAC 721
||| ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 724 TCCCCAGCTTCGTCTCTCAGGTCCGACATCTTTTGCACCTATCATCGAAAGGGCCATGAC 783
Query 722 AATTGTGGAAGAAAGTGGTGGCCAGTACCATGTTCTTCTCATCATCGCTGACGGACAGGT 781
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 784 AATTGTGGAAGAAAGTGGTGGCCAGTACCATGTTCTTCTCATTATCGCTGATGGACAGGT 843
Query 782 GACAAGAAGTGTTGATACAGATAACGGCGGATTCAGTCCACAAGAGCAGCAGACTATTGA 841
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 844 GACAAGAAGTGTTGATACAGATAACGGTGGATTCAGTCCACAAGAGCAGCAGACTATTGA 903
Query 842 TGCCATTGTTAGAGCAAGTGAATATCCTTTGTCTATAGTTCTTGTTGGTGTTGGAGATGG 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TGCCATTGTTAGAGCAAGTGAATATCCTTTGTCTATAGTTCTTGTTGGTGTTGGAGATGG 963
Query 902 -CCCTTGGGACACCATGAGACAGTTTGATGACAACATCCCTGCTCGTGCCTTTGACAATT 960
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 964 TCCC-TGGGACACCATGAGACAGTTTGATGACAACATCCCCGCTCGTGCCTTTGACAATT 1022
Query 961 TCCAGTTTGTGAATTTCACGGATATAATGTCAAAGAACATTGATCCAGCAAGAAAAGAGG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TCCAGTTTGTGAATTTCACGGATATAATGTCAAAGAACATTGATCCAGCAAGAAAAGAGG 1082
Query 1021 CAGAATTCGCGCTTTCCGCCTTGATGGAGATCCCGTCTCAGTATAAAGCCACCCTCGAGC 1080
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1083 CAGAATTCGCGCTTTCTGCCTTGATGGAGATCCCGTCTCAGTATAAAGCCACCCTCGAAC 1142
Query 1081 TAGGCTTACTTGGACAGAGAACTGGACATTGTCCAAACAGGATTGCGCTTCCACCACCAA 1140
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1143 TAGGCTTACTTGGACAAAGAACCGGACATTGTCCAGACAGGATTGCGCTTCCACCACCAA 1202
Query 1141 CTTATGCTACTCAATCTATGCGCAACAGCCCAAGAACTTCCCGATCAACCAGCTTTCAAA 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1203 CTTATGCTACTCAATCTATGCGCAACAGCCCAAGAACTTCCCGATCAACCAGTTTTCAAA 1262
Query 1201 ACAGACCATATGATAATGGTGTTTCCTCTACACCACCTTCAACTACTCGTAACGAGGGCC 1260
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1263 ACAAACCATATGATAATGGTGTTTCCTCTACACCACCTTCAACTACTCATAACGAGAGCC 1322
Query 1261 AGCAACAGGTTTGCCCCGTATGTCTAGTGAGTCCAAAGAACTTGGCTTTCAACTGTGGTC 1320
|||||||| ||||||||||||||||||||||| |||||||| |||||||||| |||||||
Sbjct 1323 AGCAACAGTTTTGCCCCGTATGTCTAGTGAGTGCAAAGAACATGGCTTTCAATTGTGGTC 1382
Query 1321 ATCAGACTTGCTCAGAATGTGGGGAGGACCTCAATATTTGCCCCATTTGCCGGAGCTCAA 1380
||||||||||| | | ||||||||| |||||| || | || |||||||||||||||||||
Sbjct 1383 ATCAGACTTGCGCTGGATGTGGGGAAGACCTCCATGTGTGTCCCATTTGCCGGAGCTCAA 1442
Query 1381 TCTCGGTTCGTATCAAGCTTTATTAAGATAAC-C-CTCAAGAGCTAAAGGAACCCAAAGG 1438
||||||||||||||||||||||||||||||| | ||||||| || ||||||||| | ||
Sbjct 1443 TCTCGGTTCGTATCAAGCTTTATTAAGATAAGTCTCTCAAGAACTGAAGGAACCCGA-GG 1501
Query 1439 TGACCCTGAGATCATTT-ACAGCAAACTTCATCCCAACTTAGATCTCATGACATTACCAG 1497
|| | ||||||| ||| ||||| ||| |||||||||||||||||||| |||||||
Sbjct 1502 TGGTC-TGAGATC-TTTCACAGCCAACACCATCCCAACTTAGATCTCAT----TTACCAG 1555
Query 1498 TGTCCTAGCATTTGTTTTTACTTTGAGCGGAATACCCGGCACCTCTCAAAGGTTT-GTAG 1556
||||||| ||||||||||||||||||| |||||| |||| |||||||||||||| ||||
Sbjct 1556 TGTCCTAACATTTGTTTTTACTTTGAGGGGAATAACCGGTTCCTCTCAAAGGTTTTGTAG 1615
Query 1557 ATAATCTGTTGTCAGTTTTGAATTCTCATTGCACATGGAAAAACCACAGCAGACTCTCCC 1616
|||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1616 ATAATCTGTTGTCAATTTTGCATTCTCATTGCACATGAAAAAACCACAGCAGACTCTCTC 1675
Query 1617 GTAAATAAAGGATCCTTTGG-TG---TTACAGATTTTTACTT 1654
|| ||||||||||||||| || ||||| ||||||||||
Sbjct 1676 GTGAATAAAGGATCCTTTCTCTGCGGTTACACATTTTTACTT 1717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81726487260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5