BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475889
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67810.1 | Symbols: SUFE2 | sulfur E2 | chr1:25426488-254273... 1186 0.0
> AT1G67810.1 | Symbols: SUFE2 | sulfur E2 | chr1:25426488-25427349
FORWARD LENGTH=862
Length=862
Score = 1186 bits (642), Expect = 0.0
Identities = 736/781 (94%), Gaps = 8/781 (1%)
Strand=Plus/Plus
Query 1 ATGAACACTTCATCGTCCTTCAAGGCCCTTGCTTCTCCTCCTTTGATTTCTACCTCTAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACACTTCATCGTCCTTCAAGGCCCTTGCTTCTCCTCCTTTGATTTCTACCTCTAGA 60
Query 61 CCAACAAGAAAATCTTTCCCTAACCCAAGATT---TTCAAGATTCTCTCCTAAACCCATC 117
||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 61 CCAACAACAAAATCTTTCCCAAACCCAAGATTCACTTCAAGATTCTCTCCTAAACCCATT 120
Query 118 ACATGCATGCGCGATTCTCTTAATCTTGGTTCGAATCCAAACGCTCCAAGCCCTCTTTCT 177
||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||
Sbjct 121 ACATGCATGCGCGATTCTCTTAATCTTGGCTCGAATCCAAAAGCTCCAAGCCCTTTTTCT 180
Query 178 TTCGCAACGGTTTCCGTTGAAGCTCCATTAGGAACAAAAACCACCGACAAGCTTCGCATC 237
|| ||||||||||| ||||| ||||| || |||||||||||| |||||||||||||||||
Sbjct 181 TTGGCAACGGTTTCGGTTGATGCTCCTTTGGGAACAAAAACCTCCGACAAGCTTCGCATC 240
Query 238 CTCGTATCTGAGTTCCGGTCCTTAACCGAACCGATCGACCGTGTAAAACGTCTCTTGAAC 297
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 241 CTCGTATCCGAGTTCCGGTCCTTAACCGAACCTATCGACCGTGTAAAACGTCTCTTAAAC 300
Query 298 TACGCGGCGGCTCTAGCCCCGCTTGATGACTCGGCTCGCGTCTCCGCGAACCGAGTCACC 357
||||| || ||||||||||||| ||||| ||||||||| |||||| ||||||||||| |
Sbjct 301 TACGCAGCAACTCTAGCCCCGCTCGATGAGTCGGCTCGCATCTCCGAGAACCGAGTCA-C 359
Query 358 GGG-TGTACGACTCAGGTTTGGTTGGAGATAAAGATGGATGAGTTTGGGAGGATGAGGTT 416
||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 GGGATGTACGACTCAAGTGTGGTTAGAGATAAAGATGGATGAGTTTGGGAGGATGAGGTT 419
Query 417 TAAAGCAGACAGTGATTCGGAGATCTCAAAAGGGTTCTGTTCTTGTCTGATCTGGATCCT 476
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 420 TAAAGCAGACAGTGATTCGGAGATCTCGAAAGGGTTTTGTTCTTGTCTTATCTGGATCCT 479
Query 477 CGACGGTGCTAAGCCAGAGGAAGTGATGGGCGTGAGAAGCGAGGACTTGTCGGAGATGAA 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGACGGTGCTAAGCCAGAGGAAGTGATGGGCGTGAGAAGCGAGGACTTGTCGGAGATGAA 539
Query 537 CGTTGGGGTTCACGGCAAGGAACAGTCAAGGGTTAACACGTGGCACAACGTGTTGATGAG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGTTGGGGTTCACGGCAAGGAACAGTCAAGGGTTAACACGTGGCACAACGTGTTGATGAG 599
Query 597 TATGCAGAAACGGACCATGACTCTAGTTGCTGCTGACGTGGCGCACCAAAGAGGACAAAG 656
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 600 TATGCAGAAACGGACCATGACTCTAGTTGCTACTGACGTGGCGCATCAAAGAGGACAAAG 659
Query 657 ACCACCGCGTGATCAGCATGATCTCTTATTTAAATACGTTAATGGAAGTTACATGGAATC 716
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACCACCGC---ACCAACATGATCTCTTATTTAAATACGTTAATGGAAGTTACATGGAATC 716
Query 717 TTCTAAGGTTCATGATTATTCTATTTCGTTGCTTCCCTTGTACTATGATTTTACTATATG 776
||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||||||
Sbjct 717 TTCTAAGGTTCATGATTATTCCATTTCGTTGCTTCCTTTGTATTATGATTTTATTATATG 776
Query 777 A 777
|
Sbjct 777 A 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5