BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475890
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67830.1 | Symbols: ATFXG1, FXG1 | alpha-fucosidase 1 | chr1... 1735 0.0
> AT1G67830.1 | Symbols: ATFXG1, FXG1 | alpha-fucosidase 1 | chr1:25431586-25432990
REVERSE LENGTH=1256
Length=1256
Score = 1735 bits (939), Expect = 0.0
Identities = 1118/1206 (93%), Gaps = 5/1206 (0%)
Strand=Plus/Plus
Query 1 TCTTTAGCTTTACCAATGAATCCAATCCTATCTTCTTTGTTTGCTCTCTCTTTGCTTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TCTTTAGCTTTACCAATGAATCCAATCCTATCTTCTTTGTTTGCTCTCTCTTTGCTTTCT 63
Query 61 TCACTATCATCATCAACACATGCTGCCCATCAATGCCATTTCCCAGCAATCTTTAACTTT 120
||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 64 TCACTATCACCATCAACACATGC--CC-ATCAATGCCATTTCCCAGCAATCTTTAACTTT 120
Query 121 GGTGACTCAAACTCCGATACCGGTGGTCTCTCCGCAGCTTTTGGCCAAGCTGGTCCTCCT 180
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGTGACTCTAACTCCGATACCGGCGGTCTCTCCGCTGCTTTTGGCCAAGCTGGTCCTCCT 180
Query 181 CATGGCTCTTCCTTCTTCGGCTCACCCGCCGGAAGATACTGCGACGGTCGTCTCGTCATT 240
|| |||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct 181 CACGGCTCTTCCTTCTTCGGCTCACCCGCGGGACGATACTGCGATGGTCGCCTCGTCATT 240
Query 241 GACTTCATAGCGGAGAGTCTTGAATTGCCATATCTAAGCGCGTTTCTAGACTCGGTTGGT 300
|||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 241 GACTTCATAGCGGAGAGTCTTGGATTACCATATCTAAGCGCGTTTCTAGACTCCGTTGGT 300
Query 301 TCAAACTTCAGCCACGGTGCTAACTTCGCGACGGCGGGGTCTCCTATAAGAGCTCTCAAC 360
||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||| |||
Sbjct 301 TCAAACTTCAGCCACGGCGCTAACTTCGCTACCGCGGGATCTCCGATAAGAGCTCTTAAC 360
Query 361 TCTACTCTTCGTCAAAGTGGATTCAGCCCATTTTCACTCGATGTTCAGTTTGTCCAGTTC 420
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || || |||
Sbjct 361 TCTACTCTACGTCAAAGTGGATTCAGCCCATTTTCACTCGATGTACAGTTCGTACAATTC 420
Query 421 TACAACTTCCACAACAGATCCCAAACTGTTCGTAGTCGCGGAGGAATCTATACGACGATG 480
|| ||||||||||||||||| ||||||||||||||||| |||||| |||| | ||| |||
Sbjct 421 TATAACTTCCACAACAGATCTCAAACTGTTCGTAGTCGTGGAGGAGTCTACAAGACAATG 480
Query 481 TTGCCTGGAGCAGACTTCTTCTCACAAGCTTTGTACACTTTTGACATTGGTCAGAACGAT 540
||||||| | | ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 TTGCCTGAATCCGACAGCTTCTCAAAAGCTTTGTACACTTTTGACATTGGTCAGAACGAT 540
Query 541 CTCACAGCCGCTTACTTCGCTAATAAAACCGTGGAACAAGTTGAAACCGAAGTTCCTGAG 600
|||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 CTCACAGCAGGTTACTTCGCTAATAAAACCGTAGAACAAGTTGAAACCGAAGTTCCTGAG 600
Query 601 ATCATCAGTCAGTTCAAGAATGCTATCAAGAATATTTATGGACAAGGAGGGAGATACTTC 660
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCATAAGTCAGTTCATGAATGCTATCAAGAATATTTATGGACAAGGAGGGAGATACTTC 660
Query 661 TGGATTCACAACACTGGACCTATTGGTTGTTTACCGTATGTGATCGAATGGTTTCCGATT 720
|||||||| |||||||||||||||||||||||| | |||||||| ||| ||||||||| |
Sbjct 661 TGGATTCATAACACTGGACCTATTGGTTGTTTAGCTTATGTGATTGAACGGTTTCCGAAT 720
Query 721 AAAGCATCAGACTTTGATTCACATGGATGTCTTTCTCCGTTGAACCACTTAGCTCAACAA 780
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 721 AAAGCATCAGACTTTGATTCACATGGATGTGTTTCTCCTTTGAACCACTTAGCTCAACAA 780
Query 781 TTCAATTACGCTTTGAAACAAGCTGTGACCGAGCTAAGAAGTTCGCTAGCTGAAGCCGCC 840
|||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||| |||
Sbjct 781 TTCAATCACGCTTTGAAACAAGCTGTGATCGAGCTAAGAAGTTCTCTATCTGAAGCAGCC 840
Query 841 ATCAGTTATGTAGATGTCTACTCTGTCAAGCATGAGTTGTTTCTTCACGCTCAGGGTCAC 900
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 841 ATCACTTATGTAGATGTCTACTCTCTCAAGCATGAGTTGTTTGTTCACGCTCAGGGTCAC 900
Query 901 GGGTTCAAGAGATCGTTGGTTTCGTGTTGTGGACATGGAGGGAAGTATAACTACAACAAG 960
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGGTTTAAGGGATCGTTGGTTTCGTGTTGTGGACATGGAGGGAAGTATAACTACAACAAG 960
Query 961 AGCATTGGGTGTGGGATGAAGAAGATTGTGAAAGGTAAAGAGGTTTACATTGGAAAGCCA 1020
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGTATCGGATGTGGGATGAAGAAGATTGTGAAAGGTAAAGAGGTTTACATTGGAAAGCCG 1020
Query 1021 TGCGATGAGCCTGAGAAGGCCGTTGTGTGGGACGGTGTGCACTTCACGCAGGCTGCTAAC 1080
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 TGCGATGAGCCTGATAAGGCTGTTGTGTGGGACGGTGTACACTTCACGCAGGCTGCTAAC 1080
Query 1081 AAATTTATCTTCGATAAGATCGCGCCAAGATTGAGCATGGCCTGTCAAAGACAGTGACAA 1140
||||| || ||||||||||| || ||| | || |||| ||||||| |||| |||||||||
Sbjct 1081 AAATTCATTTTCGATAAGATTGCTCCAGGGTTAAGCAAGGCCTGTAAAAGGCAGTGACAA 1140
Query 1141 TAAGAAGAAACAAGCTTTTCTTCTTTTTATGAGTTTGTTTCTTTTAAGCTCTTAGAAAGG 1200
||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||
Sbjct 1141 CAAGAAGAAACAAGCTTTTCTTCTTTTTATGAGTTTGTTTCTATGATT-TCTTAGACAGG 1199
Query 1201 GAAACA 1206
|||||
Sbjct 1200 -AAACA 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5