BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475894
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67856.1 | Symbols: | RING/U-box superfamily protein | chr1... 743 0.0
AT1G67855.1 | Symbols: | unknown protein; Has 30201 Blast hits... 512 1e-144
> AT1G67856.1 | Symbols: | RING/U-box superfamily protein | chr1:25442404-25443019
FORWARD LENGTH=616
Length=616
Score = 743 bits (402), Expect = 0.0
Identities = 506/554 (91%), Gaps = 15/554 (3%)
Strand=Plus/Plus
Query 1 GAAGAGGGCCAAAGACTCTAGAAACAGAAAACAGTATC-AGTAGCAAGAAGAATGGGTCT 59
||||||||| ||||||||||||||||| |||||||||| | ||| ||||||||||||| |
Sbjct 33 GAAGAGGGCGAAAGACTCTAGAAACAG-AAACAGTATCTA-TAGGAAGAAGAATGGGTAT 90
Query 60 TTCTCATTACCCAACAGCGTCTGAAGGAGTAG-TGCCAATGCTGGTGATGAACACAGTTG 118
|||||||||||| ||||||||||||||||| | |||||||||| || |||||||||||||
Sbjct 91 TTCTCATTACCCGACAGCGTCTGAAGGAGT-GATGCCAATGCTAGTAATGAACACAGTTG 149
Query 119 TTTCAGTGTCTGTCTTTAAGAACATGGTAAGATCTGTTCTCAACATGGTGAGCTCTGAGA 178
||||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 150 TTTCAGTGTCTCTAGTAAAGAACATGGTAAGATCTGTTGTCAACATGGTGAGCTCTGAGA 209
Query 179 CCAATGAGGCAAGGAACATAGAGGACGACCAAGCTCATGAGGATTCAAAAAGAAGAAGAA 238
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 210 CCAATGAGGCAAGGAACAAAGAGGACGACCAAGATCATGAGGATTCAAAAAGAAGAAGAA 269
Query 239 GAATCTCTGTAACACACTTTGGA--TCTG-CTGAGAACAGAGGAAGCAAGCACGAGAGAG 295
||||||| | |||||||||| | |||| ||||||||||||||||| | |||||||||
Sbjct 270 GAATCTCAATCACACACTTTGAATCTCTGTGTGAGAACAGAGGAAGCAGGAACGAGAGAG 329
Query 296 AAGCTATGGAgtgttgtgtgtgtctgtgtgGGTTTAAAGAGGAGGAAGAGGTGAGTGAGT 355
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 330 AAGCTATGGACTGTTGTGTGTGTCTTTGTGGGTTTAAAGAGGAGGAAGAGGTGAGTGAGT 389
Query 356 TAGTGTCCTGCAAGCATTACTTTCACACTGCTTGCCTAGATAAATGGTTTAGTAATGACC 415
|||||||||||||||||||||||||| | ||||| | |||||||||||| ||||| |||
Sbjct 390 TAGTGTCCTGCAAGCATTACTTTCACTCAGCTTGTTTGGATAAATGGTTTGGTAATAACC 449
Query 416 ACACCACTTGTCCTCTCTGCAGATCCATTCTTTAGACTTTCCTTTGATGGCTTTTCACCA 475
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct 450 ACACAACTTGTCCTCTCTGCAGATCCATCCTTTAGACTTTCCTTTTATGGCTTTTCAC-A 508
Query 476 ATTTTTT---AA-TGTTTTCTAGTTTCTATTTTGGGAAACTC-GTATTCTGTTGTGTCCA 530
||||||| || ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 509 ATTTTTTTTTAAATGTTTTCTAGTTTCTATTTTGGGAAACTCAG-ATTCTGTTGTGTCCA 567
Query 531 CTTTCTGGGTTTTG 544
|||| |||||||||
Sbjct 568 CTTTGTGGGTTTTG 581
> AT1G67855.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:25442256-25442876
REVERSE LENGTH=467
Length=467
Score = 512 bits (277), Expect = 1e-144
Identities = 344/376 (91%), Gaps = 5/376 (1%)
Strand=Plus/Minus
Query 68 ACCCAACAGCGTCTGAAGGAGTAG-TGCCAATGCTGGTGATGAACACAGTTGTTTCAGTG 126
|||| ||||||||||||||||| | |||||||||| || |||||||||||||||||||||
Sbjct 375 ACCCGACAGCGTCTGAAGGAGT-GATGCCAATGCTAGTAATGAACACAGTTGTTTCAGTG 317
Query 127 TCTGTCTTTAAGAACATGGTAAGATCTGTTCTCAACATGGTGAGCTCTGAGACCAATGAG 186
||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 316 TCTCTAGTAAAGAACATGGTAAGATCTGTTGTCAACATGGTGAGCTCTGAGACCAATGAG 257
Query 187 GCAAGGAACATAGAGGACGACCAAGCTCATGAGGATTCAAAAAGAAGAAGAAGAATCTCT 246
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 256 GCAAGGAACAAAGAGGACGACCAAGATCATGAGGATTCAAAAAGAAGAAGAAGAATCTCA 197
Query 247 GTAACACACTTTGGA--TCTG-CTGAGAACAGAGGAAGCAAGCACGAGAGAGAAGCTATG 303
| |||||||||| | |||| ||||||||||||||||| | |||||||||||||||||
Sbjct 196 ATCACACACTTTGAATCTCTGTGTGAGAACAGAGGAAGCAGGAACGAGAGAGAAGCTATG 137
Query 304 GAgtgttgtgtgtgtctgtgtgGGTTTAAAGAGGAGGAAGAGGTGAGTGAGTTAGTGTCC 363
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 GACTGTTGTGTGTGTCTTTGTGGGTTTAAAGAGGAGGAAGAGGTGAGTGAGTTAGTGTCC 77
Query 364 TGCAAGCATTACTTTCACACTGCTTGCCTAGATAAATGGTTTAGTAATGACCACACCACT 423
|||||||||||||||||| | ||||| | |||||||||||| ||||| ||||||| |||
Sbjct 76 TGCAAGCATTACTTTCACTCAGCTTGTTTGGATAAATGGTTTGGTAATAACCACACAACT 17
Query 424 TGTCCTCTCTGCAGAT 439
||||||||||||||||
Sbjct 16 TGTCCTCTCTGCAGAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26071522293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5