BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475901
Length=2647
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67930.1 | Symbols: | Golgi transport complex protein-relat... 4143 0.0
> AT1G67930.1 | Symbols: | Golgi transport complex protein-related
| chr1:25474140-25477423 REVERSE LENGTH=2668
Length=2668
Score = 4143 bits (2243), Expect = 0.0
Identities = 2527/2661 (95%), Gaps = 31/2661 (1%)
Strand=Plus/Plus
Query 2 TTTGAAAAATGAGTATCATCGCTTTGA--T-CTGCTAAAATCGCCATTGCAAAAAATTCA 58
||||||||||||| | |||||||||| | ||||||||||||||||||| ||||||||
Sbjct 8 TTTGAAAAATGAG--T-ATCGCTTTGATCTCCTGCTAAAATCGCCATTGC--AAAATTCA 62
Query 59 AAACCTGTAGAGA-AGAAA-T-T--GAAAATGGCACTACCTCCTTCGTCTCCTT---CAT 110
||||||||||||| |||| | | ||||||||||||||||| |||||||||| |||
Sbjct 63 AAACCTGTAGAGATTGAAACTGTAAAAAAATGGCACTACCTCCATCGTCTCCTTCACCAT 122
Query 111 CATCTCCATCTCTTCAACGTCTCTCCACCTTCAAAAACCCTCCTCCTTCTTCACTCTCCT 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CATCTCCATCTCTTCAACGTCTCTCCACCTTCAAAAACCCTCCTCCTTCTTCACTCTCCT 182
Query 171 CCGCCGCACCACCACCACAAACACCGTCATCTTCCTCCTCTTCGCCGCTCGATTCTTTCG 230
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 183 CCGGCGCACCACCACCACAAACACCGTCATCTTCCTCTTCTTCGCCGCTCGATTCTTTTG 242
Query 231 CCACCGATCCAAttctctcccctttcctctc-tccttccttctcctccgcatctttctcc 289
||||||||||||| |||||||| |||||||| | ||||||||||||||||||| ||||||
Sbjct 243 CCACCGATCCAATCCTCTCCCCATTCCTCTCAT-CTTCCTTCTCCTCCGCATCATTCTCC 301
Query 290 tccgccgctctcgcttctggatctccggcttccACCGCCGAACGTCTCCACCAAGCTATC 349
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 302 TCCGCCGCTCTCGCTTCTGGATCTCCGGCCTCCACCGCCGAACGTCTCCACCAAGCAATC 361
Query 350 CGCCTCCTCGATTCACAGCTCCGTAATGACGTCAtctctcgtcaccctgaattgctcgct 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CGCCTCCTCGATTCACAGCTCCGTAATGACGTCATCTCTCGTCACCCTGAATTGCTCGCT 421
Query 410 cagctctcttctctctcacacgccgatatctctctctcttctctccgatcctccgtctct 469
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 422 CAGCTCTCTTCTCTCTCACACGCCGATGTATCTCTCTCTTCTCTCCGATCCTCCGTCTCT 481
Query 470 tcactccaatctTCAATTCGCCGTGTTAGATCCGATCTCTCTGAACCAATCAAATCGATC 529
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 482 TCACTCCAATCTTCAATTCGCCGTGTCAGATCCGACCTCTCTGAACCGATCAAATCGATC 541
Query 530 CGATCCAAATCTGTTCAGCTATCAAATCTCCTCT-CCGCTACTGAGTTACTCTCTCACTC 588
||||| ||||||||||||||||| ||||||| | | |||||||||||||| ||||||||
Sbjct 542 CGATCTAAATCTGTTCAGCTATCTAATCTCC-ATACAGCTACTGAGTTACTATCTCACTC 600
Query 589 GGTTCGTACGCTTCGTCTCTCTAAGAAGCTTCGAGATCTAACGGATTCTCCTGATCCAGA 648
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 601 CGTTCGTACGCTTCGTCTCTCTAAGAAGCTTCGAGATCTAGCGGATTTTCCTGATCCAGA 660
Query 649 TAAGATCGATCTCACCAAAGCTGCACAGCTCCATTTCGAGATCTTAACAATGTGTAAAGA 708
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 661 TAAGATCGATCTCACTAAAGCTGCACAGTTCCATTTCGAGATCTTAACAATGTGTAAAGA 720
Query 709 GTACGATCTCTTCGGCATTGATGTGATCGACGAAGAAATCAAGTTTGTTACTGAGATTGG 768
||| |||||||| |||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 721 GTATGATCTCTTTGGCATTGATGTGATTGATGAGGAAATCAAGTTTGTTACTGAGATTGG 780
Query 769 TGAGAAATTGAGGTCTGAAGCGATGAAGGTGTTGGAGAGAGGCATGGAAGGGTTGAATCA 828
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGAGAAATTGAGATCTGAAGCTATGAAGGTGTTGGAGAGAGGCATGGAAGGGTTGAATCA 840
Query 829 AGCTGAGGTTGGGACTGGGCTGCAAGTTTTCTATAACCTTGGAGAGCTTAAGCCTACGGT 888
|||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 841 AGCTGAAGTTGGGACTGGTTTGCAAGTTTTCTATAACCTTGGAGAGCTTAAGTCTACGGT 900
Query 889 AGATCAATTGGTGAACAAGTATAAGGGAATGGCTGTGAAGAGTGTGAGTGTTGCTATGGA 948
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGATCAATTGGTGAATAAGTATAAGGGAATGGCTGTGAAGAGTGTGAGTGTTGCTATGGA 960
Query 949 TATGAAAGCTATTTCTTCTGGCTCAGGTGGTGGCTTCGGGCCTGGTGGGATTAGGTCTAG 1008
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TATGAAAGCTATTACTTCTGGCTCAGGTGGTGGCTTCGGGCCTGGTGGGATTAGGTCTAG 1020
Query 1009 TGGAGCACCGCACATTGGTGGCGGTGCTAAAGTTAGGGAGGCGTTGTGGCAGAGGATGGC 1068
||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CGGATCACCGCATATTGGTGGTGGTGCTAAAGTTAGGGAGGCGTTGTGGCAGAGGATGGC 1080
Query 1069 TAGTTGTATGGAGCAATTGAATTCACTTGTAGTTGCTGTGTGGCATTTGCAGCGTGTACT 1128
|||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TAGTTGTATGGAACAGTTGTGTTCACTTGTAGTTGCTGTGTGGCATTTGCAGCGTGTACT 1140
Query 1129 GTCTAAGAAGAGGGATCCATTTACTCATGTCCTTCTTCTTGACGAAGTCATCAAGGAAGG 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GTCTAAGAAGAGGGATCCATTTACTCATGTCCTTCTTCTTGACGAAGTCATCAAGGAAGG 1200
Query 1189 GGATTCTATGTTAACCGACAGAGTCTGGGATGCGCTTGTGAAGGCGTTTACTAGCCAAAT 1248
||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1201 CGATTCTATGTTAACCGATAGAGTCTGGGATGCACTTGTGAAGGCTTTTACTAGCCAAAT 1260
Query 1249 GAAGTCTGCATACACAGCTTCGAGTTTTGTAAAAGAAATATTCACCATGGGATATCCAAA 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1261 GAAGTCTGCATACACAGCTTCGAGTTTTGTAAAAGAAATATTCACCATGGGATATCCGAA 1320
Query 1309 GCTTGTGTCTATGATAGAAAATCTTCTTGAAAGGATTTCTCGTGATACAGATGTTAAAGG 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GCTTGTGTCTATGATAGAAAATCTTCTTGAAAGGATTTCTCGTGATACAGATGTTAAAGG 1380
Query 1369 AGTGTTACCTGCCATTAATTTAGAAAGGAAAGAACAAATGGTTGCATGCATTGCAATATT 1428
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1381 AGTGTTACCTGCCATTAATTTAGAAAGGAAAGAACAAATGGTTGCATGCATTGCTATATT 1440
Query 1429 CCAAACTGCTTTCTTATCCCTTTGCTTTGGCCGCTTGTCAGATCTTGTGAACTCGATATT 1488
||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 1441 CCAGACTGCTTTCTTATCCCTATGCTTTGGCCGCTTGTCAGACCTTGTAAACTCGATATT 1500
Query 1489 CCCTATGTCGAGCCGTGGGAGTTTACCTTCGAAAGAACAGATCTCACAGGTATTATCACA 1548
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1501 CCCTATGTCGAGCCGTGGGAGTTTACCTTCGAAAGAACAGATTTCACAGGTATTATCACA 1560
Query 1549 CATTCAAGATGAGATTGAGGCTGTTCATCCAGATGCTCGTTTGACTCTTCTAGTTTTGCG 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 CATTCAAGATGAGATTGAGGCTGTTCATCCAGATGCTCGTTTGACTCTTCTAGTTTTGCG 1620
Query 1609 TGAGATAGGCAAGGCCCTCAGTAACCTAGCTCAACGAGCTGAGTGCCAGATTTCTACAGG 1668
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TGAGATAGGCAAGGCCCTTAGTAACCTAGCTCAACGAGCTGAGTGCCAGATTTCTACAGG 1680
Query 1669 CCCTGAGACGCGGCAGATATCAGGTCCTGCGACTTCAACACAGATCAGGAACTTCACATT 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 CCCTGAGACGCGGCAGATATCAGGTCCTGCGACTTCAACACAGATCAGGAACTTCACATT 1740
Query 1729 ATGTCAGCATTTGCAAGGAATCCACACACATATCTCATCCATGGTAGCAGACCTTCCCAG 1788
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1741 ATGTCAGCATCTGCAAGGAATCCACACACATATCTCATCCATGGTAGCGGACCTTCCCAG 1800
Query 1789 TATTGCTGCTGATGTATTGTCTCCTTATCTGGCTGCAATCTATGATGCCGCATGTGAGCC 1848
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1801 TATTGCTACTGATGTATTGTCTCCTTATCTGGCTGCAATCTATGATGCGGCATGTGAGCC 1860
Query 1849 AGTTACACCTTTGTTTAAAGCAATGCGAGACAAGCTCGAGTCATGCATTCTTCAAATCCA 1908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 AGTTACACCTTTGTTTAAAGCAATGCGAGACAAGCTCGAGTCATGCATTCTTCAAATCCA 1920
Query 1909 TGATCAAAACTTTGGTGTTGATGATGCTG-CTATGGACAACAATGCTTCCTCATACATGG 1967
||||||||||||||||| |||||| |||| | ||||||||||| ||||||||||||||||
Sbjct 1921 TGATCAAAACTTTGGTGCTGATGACGCTGAC-ATGGACAACAACGCTTCCTCATACATGG 1979
Query 1968 AAGAGTTGCAGAGATCGATTCTTCACTTCCGCA-GCGAGTTCCTATCTAGACTATTGCCA 2026
| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1980 AGGAGTTGCAGAGATCGATTCTTCACTTCCGCAAG-GAGTTCCTATCTAGACTATTGCCT 2038
Query 2027 TCCGCAGCAACCGCTAACACTGCAGGGACAGAATCGATCTGCACTAGACTCACAAGACAA 2086
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2039 TCCGCAGCAAATGCTAACACTGCAGGAACAGAATCGATCTGCACAAGACTCACAAGACAA 2098
Query 2087 ATGGCTTCGAGGGTTTTGATCTTCTACATCAGACATGCGTCCCTTGTGCGACCGCTTTCA 2146
||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 2099 ATGGCGTCAAGGGTTTTGATCTTCTACATCAGACATGCATCCCTTGTGCGACCACTTTCA 2158
Query 2147 GAATGGGGAAAACTCAGGATGGCCAAAGACATGGCCGAGCTTGAACTTGCAGTGGGACAA 2206
||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2159 GAATGGGGAAAACTCAGAATGGCCAAAGACATGGCCGAGCTGGAACTAGCAGTGGGACAG 2218
Query 2207 AATCTGTTTCCCGTGGAACAACTCGGAGCACCGTACAGAGCTCTTAGAGCATTTAGACCA 2266
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2219 AATCTATTTCCCGTGGAACAACTCGGAGCACCGTACAGAGCTCTTAGAGCGTTTAGGCCT 2278
Query 2267 CTGATTTTCCTGGAAACATCTCAAATGGGATCATCTCCTCTCATCCAGGATCTACCACCG 2326
|| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 2279 TTGGTTTTCCTGGAAACATCTCAAATGGGATCATCTCCTCTCATCAATGATCTACCACCG 2338
Query 2327 AGCATCGTCCTCCATCATCTCTACACGAGAGGCCCGGACGAGTTGGAGTCACCAATGCAG 2386
||||||||||| |||||||||||||| |||||||| |||||||| |||||||| ||||||
Sbjct 2339 AGCATCGTCCTACATCATCTCTACACAAGAGGCCCAGACGAGTTAGAGTCACCGATGCAG 2398
Query 2387 AAGAACAGACTAAGTCCTAAGCAATACTCACTGTGGCTTGATAACCAAAGAGAGGATCAG 2446
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2399 AAGAACAGACTAAGTCCTAAACAGTACTCACTGTGGCTTGATAACCAAAGAGAGGATCAG 2458
Query 2447 ATCTGGAAAGGGATAAAAGCGACTTTGGATGATTATGCAGTGAAGATCAGATCGAGAGGG 2506
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2459 ATCTGGAAAGGGATAAAAGCAACTTTGGATGATTATGCAGTGAAGATCAGATCGAGAGGG 2518
Query 2507 GACAAAGAGTTTAGTCCAGTTTATCCTCTAATGCTTCAAATTGGTTCATCTTTAACAACA 2566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2519 GACAAAGAGTTTAGTCCAGTTTATCCTCTAATGCTTCAAATTGGTTCATCTTTAACA-CA 2577
Query 2567 CAAGAAAACTTATAGGCTCCAAGTGCTTTGTTACCGAACCTATATTCTTCTATTGCCAAC 2626
| ||||||||||| ||| |||||||||||||||| | ||||||||||||||| |||
Sbjct 2578 -A-GAAAACTTATAAGCT----GTGCTTTGTTACCGAATCAATATTCTTCTATTGCGAAC 2631
Query 2627 TTTTATGTCTCATGGATTTTT 2647
|||| ||||||||||||||||
Sbjct 2632 TTTTTTGTCTCATGGATTTTT 2652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131437390660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5