BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475902
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68160.1 | Symbols: | Protein of unknown function (DUF3755)... 1480 0.0
> AT1G68160.1 | Symbols: | Protein of unknown function (DUF3755)
| chr1:25545808-25548894 REVERSE LENGTH=1451
Length=1451
Score = 1480 bits (801), Expect = 0.0
Identities = 1033/1141 (91%), Gaps = 31/1141 (3%)
Strand=Plus/Plus
Query 4 CAAGCTTTATCCATGGCGTAAGATGATTCACCTTCTCAAAGTTTG-TCTCTTTTTTCATA 62
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 134 CAAGCTTTATCCATGGCGTAAGATGATTCACCTTCTCAAAGTTTGATC-CTTTTTTCATA 192
Query 63 TCTGATCACAA-GAGGGTTTCGGGTTTGATTTCTGATTGTTAAAGTTTAAATATTTTTAG 121
|||||||| || ||| |||| ||||||||||||| ||||||||||||| | || |||
Sbjct 193 TCTGATCA-AAGGAGAGTTTTGGGTTTGATTTCTAATTGTTAAAGTTT-TA-ATCTTT-- 247
Query 122 TTGAAATTTGGGTTTAGGGTTTGATTATGTGGATGGCTAGTCAATCTAATTCTGGGTTCG 181
|| |||||||||| | ||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 248 TT---ATTTGGGTTT-GTGTTCGATTATGTGGATGGCTACTCAATCAAATTCTGGGTTCG 303
Query 182 AGTT-TTTGAATTCTATGATGAGTCGTCACGCTATTAATTTCCAATCTAACACCTCCTCG 240
| || ||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 304 A-TTCTTTGAGTTCTATGATGAGTCGTCACGCTATTAATTTCCAATCTAACACTTCTTCG 362
Query 241 GAGATGATTTCTATGAGTCCGTACTTGGGGATG---A-G--TATGATCAATGTTGCTTCT 294
||||||| | | ||||||||||||||||||||| | | |||||||||||||| ||||
Sbjct 363 GAGATGACTCCAATGAGTCCGTACTTGGGGATGAATATGAATATGATCAATGTTGGTTCT 422
Query 295 CCTGGTTTAGTTCAAACCGGGAATTCTTCGAATGCTTCTGATTCGGTTTCTGGCCTCATG 354
|||||||| |||||||||||||||||||||||| ||| ||||||| |||||| || | |
Sbjct 423 CCTGGTTTTCTTCAAACCGGGAATTCTTCGAATGGTTCCGATTCGGGTTCTGGTCTAAAG 482
Query 355 CTTGATACTGCCATGGCTAGTGAATGGTCAAATGAAGAACAATACATATTGGATGATGGT 414
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 483 CTTGATACTTCCATGGTTAGTGAATGGTCAAATGAAGAACAATACATATTGGATGCTGGT 542
Query 415 CTTGAAAAATATAAGGATATACCAAGTATCGAGAGGTATGTTCAAATTGGAAACAGTTTA 474
|||||||||||||||||||| |||||||| || | |||| ||||||||||||||| ||||
Sbjct 543 CTTGAAAAATATAAGGATATGCCAAGTATTGATATGTATATTCAAATTGGAAACACTTTA 602
Query 475 CCTGATAAAAGTGTTCGAGACATTGCTTTGCGGTGTATGTGGATGACTAGAAAGAGAAGA 534
|||||||||||| ||||||| |||||||||||||||| |||| ||| ||||||||||||
Sbjct 603 CCTGATAAAAGTATTCGAGATATTGCTTTGCGGTGTAGGTGGCTGAGGAGAAAGAGAAGA 662
Query 535 AAATCAGAAGAATTAAATTGTGGAAGAAGAACGAGTTCTAGCAAGGACAAGCAGGTGGAA 594
||||||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||
Sbjct 663 AAATCAGAAGAATTAAACTGTGGAAGAAGAGCAAGTTCTAGCAAGGGCAAGCAGGTGGAA 722
Query 595 TCGTCTTCTAAGTCAAGCATTCCCTCTGTTTTGCCTCATAACATGGCTTCGTATCCTTTC 654
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 723 TCGTCGTCTAAGTCAAGCATTCCCTCTGTTTTGCCTCATAACATGGCTTCATATCCTTTC 782
Query 655 TCAGTGCCCTCTACAAGCACCAGTAAACAAATTACATCTGAAGATTTAAGTGGCCATGCA 714
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 783 TCAGGGCCATCTACAAGCACCAGTAAACAAATTACGTCTGAAGATTTAAGTAGCTATGCA 842
Query 715 ATAAATCTCT-TAGAACAGAATGTACGAGCTTTTAGTCAAATTAGAGCTAATCTCTCCTC 773
| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 ACAAATCT-TATAGAACAGAATGTACGAGCTTTTAGTCAAATTAGAGCTAATCTCTCCTC 901
Query 774 ATATAAGGTAGAGGATAACGTAGATCTCTTTCGTCAGGCAAGGAACAACCTTATCACCAT 833
|||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ATATAAGGCAGGGGATAACCTAGATCTCTTTCGTCAGGCAAGGAACAACCTTATCACCAT 961
Query 834 TCAAAATGACATGAATAATATGCCTGGCTTGATGAACCAGATGCCACCATTGCCGGTCAC 893
|||||||| || |||||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 962 CCAAAATGAGATAAATAATATGCCTGGATTGATGAACAAGATGCCACCATTGCCAGTCAC 1021
Query 894 AATCAATGATGATCTCTCGCTGATG---CCATTCCACACGATGCAAAGTGGCGGCTTCCA 950
||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||
Sbjct 1022 AATCAATGATGATCTCTCGGTGATGATGCCATTCAATACGATGCAAAGTGGCGGCTTCCA 1081
Query 951 TACGAAGCAGAAGCCTT-G-AA-TCATCTGGTTTCCCTTAATTACCTGTAAATTATCCTA 1007
|| |||| ||||| ||| | || ||||||||||||||||| |||||||||||||||||||
Sbjct 1082 TAGGAAGTAGAAGTCTTAGGAAATCATCTGGTTTCCCTTAGTTACCTGTAAATTATCCTA 1141
Query 1008 AAGAAGCTGGAGGAGA-AGaaaaaaaGCTCATCACATGTTGTGAAGTTTGTAGAAATGTG 1066
||||||||||||||| | ||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1142 AAGAAGCTGGAGGAGGTA-AAAAAAAGCTCATCAAATGTTGGGAAGTTTGTAGAAATGTG 1200
Query 1067 ATTCTTTCATAACACCAAGGATCTTTATTGCCGGGCGCCAATGTTGAAACAGGACATAAT 1126
|||||||| ||||||||| |||||||||||| | ||| | |||||||||| ||||||||
Sbjct 1201 ATTCTTTCGTAACACCAACGATCTTTATTGCTGCGCGGGA-TGTTGAAACAAGACATAAT 1259
Query 1127 a 1127
|
Sbjct 1260 A 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62148274710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5