BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475905
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68140.1 | Symbols: | Protein of unknown function (DUF1644)... 1908 0.0
> AT1G68140.1 | Symbols: | Protein of unknown function (DUF1644)
| chr1:25538987-25541740 REVERSE LENGTH=1678
Length=1678
Score = 1908 bits (1033), Expect = 0.0
Identities = 1267/1371 (92%), Gaps = 52/1371 (4%)
Strand=Plus/Plus
Query 1 GGACGCGTGGAGGTTTTACGTGACGTGAA-GAAAGAGAAACTCCGATTCCAGAGCTTGGT 59
||||||||||| ||||||| ||||||||| ||||||||||||||||| ||||||| | |
Sbjct 1 GGACGCGTGGACGTTTTACTTGACGTGAAGGAAAGAGAAACTCCGATACCAGAGC-T--T 57
Query 60 GGTGGAGCAGTGGAGACGCTTCCACGCGAATCTCGCAGTCCCACTCG------T-C-T-- 109
||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 58 GGTGGAGCAGTGGAGACGCTTCCACGCGAATCTCGCAGTCCCACTCGTCTTCCTCCTTCC 117
Query 110 -TC-C-T-C------TACCTTACCTCTCTCGGTCTCG----CTCACTCGATTCAAGCCTC 155
|| | | | |||||||||||||||||||||| ||| ||||||||||||||
Sbjct 118 CTCTCTTCCTTTGAATACCTTACCTCTCTCGGTCTCGCTCCCTCCCTCGATTCAAGCCTA 177
Query 156 TTCGTCTTCTTACGCTGTGAT-TTCCAAACCCTAA-----TT--TTTCAATCCCTAAAGG 207
||||||||||||||||||| | || ||||||||| || ||||||||||||||||
Sbjct 178 TTCGTCTTCTTACGCTGTG-TCTT-GAAACCCTAATCTTTTTCATTTCAATCCCTAAAGG 235
Query 208 TGTGATCTTGAGATTATGGCCAAAGCTAGGAGGGCAGGACGCAGGGTTCCTTCGCGACGC 267
|||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 236 TGTGATTTTGAGATTATGGCCAAAGCTAGGAAGGCAGGACGTAGGGTTCCTTCACGACGC 295
Query 268 TTCAGGGCAAGAGCAAAACCGTACAAATTTCCATCTTCTAACCGTCTTGTGGCAAGGAAT 327
|||||||||||||||||||| |||||||||||||||||||| | |||||||| || ||
Sbjct 296 TTCAGGGCAAGAGCAAAACCATACAAATTTCCATCTTCTAAAAGACTTGTGGCGAGAAAC 355
Query 328 ATGTTTGCAGAAGATTGTTCAAAGTGTCTAGAGAAGAGGGACTGGGAGAATGTTATATGT 387
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 356 ATGTTTGCGGAAGATTGTTCAAAGTGTCTAGAGAAGAGGGATTGGGAGAATGTTATATGT 415
Query 388 TCGGTTTGCATGGAGTGTCCACACAATGCTGTTCTTCTCCTCTGCTCATCTCATGACAAG 447
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 416 TCGGTTTGCATGGAGTGTCCACACAACGCTGTCCTTCTTCTCTGCTCATCTCATGACAAG 475
Query 448 GGATGTCGTCCTTACATGTGTGGAACCAGTTTCCGGTATTCCAATTGCTTAGATCAGTAC 507
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 476 GGATGTCGTCCTTACATGTGTGGAACCAGTTTCCGGTATTCTAATTGCTTAGATCAGTAC 535
Query 508 AAGAAAGCATCAGCTAAGCTAAAGTCATCAAGCCATCAACAGATCAATAAGTCTGAGCTT 567
|||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 536 AAGAAAGCGTCAGCTAAGCTGAAGACATCGGGCCATCAACAGATCAATAAGTCTGAGCTT 595
Query 568 GGAAATCTCACATGCCCACTTTGTAGAGGCCAGGTGAAAGGTTGGACAATCGTACAGCCT 627
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 596 GGAAATCTCACATGCCCACTTTGTAGAGGACAGGTGAAAGGTTGGACAATCGTACAGCCT 655
Query 628 GCTCGTGACTTTTTGAATCTTAAGAAGAGGATCTGTATGCAGGAGAACTGTGTTTTTGCT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 656 GCTCGTGACTTTTTGAATCTTAAGAAGAGGATCTGTATGCAGGAGAACTGTGTTTATGCT 715
Query 688 GGAACCTTCAAAGAGCTGAGGAAACACATGAAAATGGACCACCCTAGTGCGAAGCCGCGT 747
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 716 GGAACCTTCAAAGAGCTGAGGAAACACATGAAAGTGGACCACCCTAGTGCGAAGCCGCGT 775
Query 748 GAAGTGGATCCTGATGTGGAGCAGAATTGGAGAAGGCTTGAGATTGAGCATGACCGGGAT 807
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 776 GAAGTGGATCCTGATGTGGAGCAGAATTGGAGAAGGCTTGAGATCGAGCATGACCGGGAC 835
Query 808 GATGTTATGAGCACGATTAGGTCGACAATGCCTGGAACAGTGGTGTTTGGTGATTACGTA 867
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 836 GATGTTATGAGCACGATTAGGTCGACAATGCCTGGTACAGTGGTGTATGGTGATTACGTA 895
Query 868 ATTGAAAGGACCAATGCCAACGGTTCAGATTTAGACGA--G-GGTGATGATGGTGCGATC 924
|||||||||| |||||||||||||||||||| |||||| | |||||||||| || ||||
Sbjct 896 ATTGAAAGGAACAATGCCAACGGTTCAGATTCAGACGAGGGTGGTGATGATGATGGGATC 955
Query 925 GATGCTGCACTTGGTAGGAATCTTGTGAATGTTTTCCTTCTGTTACATGCTTTTGGGGCA 984
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GATGCTGCATTTGGTAGGAATCTTGTGAATGTTTTCCTTCTGTTACATGCTTTTGGGGCA 1015
Query 985 TCAGAG-AATCAGA-CAAGGCGCTCTGATTCAGATTCGAATGACTCGACAACAATCAACC 1042
|||| | ||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TCAG-GTAATCAGATC-AGACGCTCTGATTCAGATTCGAATGACTCGACAACAATCAACC 1073
Query 1043 GCGGAACAAGTGAGCTGAATTTCTCTGAAGAAGAGGATGAAGAGGA-G-GG-GGAGAGGC 1099
| |||||||||||||||||||||||||||||||| || |||||||| | || ||||||||
Sbjct 1074 GAGGAACAAGTGAGCTGAATTTCTCTGAAGAAGAAGAGGAAGAGGAGGAGGAGGAGAGGC 1133
Query 1100 ATAGTAACAGTAACTCTTTGGCAAGTCGAATGAGGCGACAAGGACGCGTTCTGCTGGGAC 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 ATAGTAACAGTAACTCTTTGGCAAGTCGAATGAGGCGACAAGGACGCGTTCTGCTGGGAC 1193
Query 1160 GTTCAGGTAGGAGACGTAGAGATAGAGAAGCTAACCAGAACACAGGTCCTCCTCCTAGAT 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GTTCAGGTAGGAGACGTAGAGATAGAGAAGCTAACCAGAACACAGGTCCTCCTCCTAGAT 1253
Query 1220 GAGAGAGA-TCACGCGAATTCAAAACAAAACCCTTTATCTGATTCTGGGTTTCAGGTAAG 1278
|||||||| |||| ||||||||||| |||||||| | |||||| |||||||||||||||
Sbjct 1254 GAGAGAGAATCACACGAATTCAAAAGAAAACCCTGT--CTGATTTTGGGTTTCAGGTAAG 1311
Query 1279 TTTTATGATATGGTTAGGTACAAAATGTAGCTTCTACAAGTTTAAAACAAA 1329
|||||| |||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1312 CTTTATGGTATGGTTAGGTACAAA-TGTAGTTTCGACAAGTTTAAAACAAA 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5