BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475906
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68130.1 | Symbols: AtIDD14, IDD14 | indeterminate(ID)-domai... 2538 0.0
AT1G25250.1 | Symbols: AtIDD16, IDD16 | indeterminate(ID)-domai... 468 9e-131
AT2G01940.3 | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger pr... 361 2e-98
> AT1G68130.1 | Symbols: AtIDD14, IDD14 | indeterminate(ID)-domain
14 | chr1:25532244-25534586 FORWARD LENGTH=1769
Length=1769
Score = 2538 bits (1374), Expect = 0.0
Identities = 1611/1719 (94%), Gaps = 41/1719 (2%)
Strand=Plus/Plus
Query 1 CTTTGTTTCTCTCTCTTAACCCATC-T-TACTTTCTTCTTCTATTAGTAAAGATGAGTAC 58
|||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 1 CTTTGTTTCTCTCTCTTAACTCATCTTATACTTTCTTCTTCTATTAGTAAAGATGAGTAC 60
Query 59 TCT-T-TACCAAATAAATAAGGAAACATAAAAAACAATCTCTCCTTCTTTCTCTACATGA 116
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTCTACCAAATAAATAAGGAAACATAAAAAACAATCTCTCCTTCTTTCTCTACATGA 120
Query 117 AAAACAAAAGATTCCTCAATTTTGTTCTTATTTTTCATTTAGTCACAGTACCTCTCTCAC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAACAAAAGATTCCTCAATTTTGTTCTTATTTTTCATTTAGTCACAGTACCTCTCTCAC 180
Query 177 TATAAACCACACTGTCTTGAGATAACAA-ACAAAAAGTGA-GA--TTAAAAACCTCATCC 232
||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct 181 TATAAACCACACTGTCTTGAGATAA-AATACAAAAAGAGAAGAGATTAAAAACCTCATCC 239
Query 233 GATGATAGACTACGAGAGAAGCAATAACACCAAGAACATCAACAACCATCATCGCAACCC 292
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 240 GATGATAGACTACGAGAGAAGCAATACCACCAAGAACATCAACACCCATCATCACAACCC 299
Query 293 TCCTCCATCTTCATCTTCCTCCGATCTTCTTCCCGACGGTAATGGAGCCGCCGTGACACA 352
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 300 TCCTCCATCTTCATCTTCCTCTGATCTTCTTCCCGACGGTAATGGAACCGCCGTGACTCA 359
Query 353 GAAGCGCAAACGGAGACCCGCCGGGACACCGGATCCGGAGGCGGAGGTAGTATCTTTATC 412
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GAAGCGGAAACGGAGACCCGCCGGGACACCGGATCCGGAGGCGGAGGTGGTATCTTTATC 419
Query 413 TCCAAGAACGTTACTAGAATCGGATCGGTACGTATGTGAGATCTGTAACCAAGGGTTTCA 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACCAAGAACGTTACTAGAATCGGATCGGTACGTATGTGAGATCTGTAACCAAGGGTTTCA 479
Query 473 AAGGGACCAGAATCTACAGATGCATAGAAGACGACATAAAGTTCCATGGAAGCTTCTAAA 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 AAGGGACCAGAATCTACAGATGCATAGAAGACGACATAAAGTTCCATGGAAGCTTCTTAA 539
Query 533 AAGAGAGACCAACGAGGAAGTAAG-AAAGAGAGTCTACGTCTGTCCGGAGCCGACATGTC 591
||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 540 AAGAGAGACCAACGAGGAAGTGAGGAAA-AGAGTCTACGTCTGTCCGGAGCCGACATGTC 598
Query 592 TTCACCACAACCCTTGTCACGCGCTCGGAGATCTCGTGGGAATCAAGAAACACTTTCGAC 651
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 TCCACCACAACCCTTGCCACGCGCTCGGAGATCTCGTGGGAATCAAGAAACACTTCCGAC 658
Query 652 GGAAACATAGTAACCATAAGCAATGGATCTGCGAGCGATGCTCAAAAGGCTACGCCGTTC 711
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 659 GGAAACATAGTAACCACAAGCAATGGATCTGCGAGCGATGCTCAAAAGGCTACGCAGTTC 718
Query 712 AATCTGATTACAAAGCTCATCTCAAAACCTGTGGCACTCGCGGCCACTCCTGTGACTGCG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AATCTGATTACAAAGCTCATCTCAAAACCTGTGGCACTCGCGGCCACTCCTGTGACTGCG 778
Query 772 GCCGAGTTTTTTCCAGAGTGGAGAGTTTCATAGAGCACCAAGACAATTGCACCGTACGAC 831
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
Sbjct 779 GCCGAGTTTTTTCCAGAGTGGAAAGTTTCATAGAGCACCAAGACACTTGCACCGTACGCC 838
Query 832 GATCCCAACCCTCCAACCACCGTTTACATGAGCAGCAACAACATACTACAAACGCTACAC 891
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 GATCCCAACCCTCCAACCACCGTTTACATGAGCAGCAACAACATACCACAAACGCTACAC 898
Query 892 AAACCGCTTCAATCGCCGAAAACAACGAAAACGCGGACCTCTCTATTGGTCCTGTATTGC 951
|||||||||||| ||| ||||||||||| |||| ||||||||| ||||||||| ||||||
Sbjct 899 AAACCGCTTCAACCGCGGAAAACAACGAGAACGGGGACCTCTCCATTGGTCCTATATTGC 958
Query 952 CTGGACATCCTTTACAAAGAAGACAATCCCCACCGTCCGATCAACAACCATCCGCTTTGC 1011
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 959 CTGGACATCCTTTACAAAGAAGACAATCCCCACCGTCGGAACAACAACCATCCACTTTGC 1018
Query 1012 TCTATCCTTTTGTTGCCTCGTGCGCGACTAATGGAAGCATCGAGCTTCAGCTACTTCCAT 1071
||||||| || ||| |||||||| || ||||||||||||||||||||||
Sbjct 1019 TCTATCCCTTCGTT------------ACTAATGGTAGTATCGAGCTTCAGCTACTTCCAT 1066
Query 1072 CGAGGCATAGTGCTGATGAGACCAGCCTTAGTCTGTCTATAGGGACAATGGATCAAACTA 1131
||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1067 CGAGGAATTGTGCTGATGAGACCAGCCTTAGTCTGTCTATAGGGACAATGGATCAAAAGA 1126
Query 1132 CAATGTCGGAAGTTgagaggaagagctacgagaagggagagacgagcctagaaagagagg 1191
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1127 CAATGTCGGAAGTTGAGAAGAAGAGCTACGAGAAGGGAGAAACGAGCCTAGAAAGAGAGG 1186
Query 1192 aggcgagaagagaaacgaagaggcagaTCGAAATTGCGGAATTGGAGTTTGCTGAAGCCA 1251
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1187 AGGCGAGAAGAGAAACAAAGAGGCAGATCGAAATCGCGGAATTGGAGTTTGCTGAAGCCA 1246
Query 1252 AGAGAATAAGGCAACATGCGAGAGCCGAGCTTCACAAAGCTCAGCTTTTTAGAGAAGAAG 1311
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1247 AGAGAATAAGGCAACATGCGAGAGCTGAGCTTCACAAAGCTCATCTTTTTAGAGAAGAAG 1306
Query 1312 CAAGTCGAAGGATTAGTGCAACGATGATGCAAATCACTTGCCACAACTGCAAGCAACATT 1371
||||| | |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1307 CAAGTAGGAGGATTAGTGCAACGATGATGCAAATAACTTGCCACAATTGCAAGCAACATT 1366
Query 1372 TTCAAGCTCCTGCTGCTTTGGTTCCACCTCCTCCTCAG-CTGCATTGTACTGATGAGAGC 1430
|||||||||| |||||||||||||| |||||||||||| | ||||||||| |||||||||
Sbjct 1367 TTCAAGCTCCGGCTGCTTTGGTTCCTCCTCCTCCTCAGAC-GCATTGTACCGATGAGAGC 1425
Query 1431 ACGTCTCTCGCCGTGAGCTACATGTCGTCGGCTACTACCGAAGGAGAAAAGGCGAGTGAT 1490
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1426 ACGTCTCTGGCCGTGAGCTACATGTCTTCGGCGACTACCGAAGGAGAAAAGGCGAGTGAT 1485
Query 1491 AGAGCATCGTCATAGTCTCATAGACCTTGAAGAGAGAACACAAAAGaaaaaaaaaTATTC 1550
|||||||| | | | ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1486 AGAGCATC-T--T---C--ATAGACCTTGAAGAGAGAACACAAAAGAAAACAAA-TATTC 1536
Query 1551 TTCTTCTTTTTCTTTGATTGGAATTGAAGATCATCTTTTGAGATTCGTTGGtttttttAT 1610
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 1537 TTCTTTTTTTTCTTTGATTGGAATTAAAGATCATCTTTTGATATTCGTTGGTTTTCTTAC 1596
Query 1611 AATACATTCTTGGTTTGTGGGTAACCAGGGTTGGATATTCACGGGGGGTTTGAttttttt 1670
| || |||||||||||||||| |||||| |||| ||||||| |||||||||||||||||
Sbjct 1597 A-TA--TTCTTGGTTTGTGGGTTACCAGGTTTGGGTATTCACTGGGGGTTTGATTTTTTT 1653
Query 1671 tttGTTTCTCAAACAAAAACCAAAGAAGAGAAGAGTTTT 1709
| | ||||||||||||||||||||||||| ||||||
Sbjct 1654 TCT----CTCAAACAAAAACCAAAGAAGAGAATAGTTTT 1688
> AT1G25250.1 | Symbols: AtIDD16, IDD16 | indeterminate(ID)-domain
16 | chr1:8849549-8851612 FORWARD LENGTH=1181
Length=1181
Score = 468 bits (253), Expect = 9e-131
Identities = 442/533 (83%), Gaps = 14/533 (3%)
Strand=Plus/Plus
Query 334 ATGGAGCCGCCGTGACACAGAAGCGCAAACGGAGACCCGCCGGGACACC-G------GAT 386
||||||| | || || || ||| | |||||||||||||| |||||||| | |||
Sbjct 1 ATGGAGCTGACGCAACCCATAAGAGAAAACGGAGACCCGCAGGGACACCAGCTAACAGAT 60
Query 387 CCGGAGGCGGAGGTAGTATCTTTATCTCCAAGAACGTTACTAGAATCGGATCGGTACGTA 446
|| || || ||||| |||||||| || |||||||||||||||||||| |||||||||||
Sbjct 61 CCAGATGCAGAGGTGGTATCTTTGTCACCAAGAACGTTACTAGAATCAGATCGGTACGTG 120
Query 447 TGTGAGATCTGTAACCAAGGGTTTCAAAGGGACCAGAATCTACAGATGCATAGAAGACGA 506
||||||||||| |||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 121 TGTGAGATCTGCAACCAAGGGTTTCAGAGAGATCAGAATCTACAGATGCATAGAAGACGA 180
Query 507 CATAAAGTTCCATGGAAGCTTCTAAAAAGAGAGACCAACGA-G-G-AAGTAAGAAAGAGA 563
|||||||| |||||||||||||| || ||||| | || || | | |||| || ||||||
Sbjct 181 CATAAAGTGCCATGGAAGCTTCTGAAGAGAGACAAGAAGGATGAGGAAGTGAGGAAGAGA 240
Query 564 GTCTACGTCTGTCCGGAGCCGACATGTCTTCACCACAACCCTTGTCACGCGCTCGGAGAT 623
|||||||| ||||| ||||| |||||||| ||||| |||| || ||||| || ||||||
Sbjct 241 GTCTACGTGTGTCCTGAGCCAACATGTCTCCACCATGACCCGTGCCACGCTCTTGGAGAT 300
Query 624 CTCGTGGGAATCAAGAAA-CACTTTCGACGGAAACATAGTAACCATAAGCAATGGATCTG 682
|| || |||||||| ||| ||||| || || ||||| ||| ||| ||||||||| | ||
Sbjct 301 CTGGTCGGAATCAA-AAAGCACTTCCGCCGTAAACACAGTGTCCACAAGCAATGGGTTTG 359
Query 683 CGAGCGATGCTCAAAAGGCTACGCCGTTCAATCTGATTACAAAGCTCATCTCAAAACCTG 742
|||| ||||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct 360 CGAGAGATGCTCCAAAGGCTATGCAGTTCAATCTGACTACAAAGCCCATCTCAAGACCTG 419
Query 743 TGGCACTCGCGGCCACTCCTGTGACTGCGGCCGAGTTTTTTCCAGAGTGGAGAGTTTCAT 802
|| | ||||| |||||||| ||||| ||||| ||||| ||||| || |||||||||||
Sbjct 420 CGGTTCACGCGGTCACTCCTGCGACTGTGGCCGCGTTTTCTCCAGGGTTGAGAGTTTCAT 479
Query 803 AGAGCACCAAGACAATTGCACCGTACGACGATCC-CAACCCTCCAACCACCGT 854
|||||| ||||| | ||||||| | || | | || |||||| |||||||||||
Sbjct 480 AGAGCATCAAGATACTTGCACCATCCGGCAA-CCTCAACCCACCAACCACCGT 531
> AT2G01940.3 | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger
protein | chr2:432275-435077 FORWARD LENGTH=1878
Length=1878
Score = 361 bits (195), Expect = 2e-98
Identities = 387/479 (81%), Gaps = 15/479 (3%)
Strand=Plus/Plus
Query 351 CAGAAGCGCAAACGGAGACCCGCCGGGACACCGGATCCGGAGGCGGAGGTAGTATCTTTA 410
|||||| | ||| | ||||| || || || || ||||| || || || || || ||||||
Sbjct 504 CAGAAGAGGAAAAGAAGACCTGCAGGTACCCCAGATCCAGATGCAGAAGTTGTGTCTTTA 563
Query 411 TCTCCAAGAACGT-TACTAGAATCGGATC-GGTACGTATGTGAGATCTGTAACCAAGGGT 468
|| |||||||| | | || ||||| || | | ||| ||||||||||||||||||||||||
Sbjct 564 TCACCAAGAAC-TCTTCTTGAATCAGA-CAGATACATATGTGAGATCTGTAACCAAGGGT 621
Query 469 TTCAAAGGGACCAGAATCTACAGATGCATAGAAGACGACATAAAGTTCCATGGAAGCTTC 528
||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 622 TTCAAAGAGACCAGAATCTCCAGATGCATAGAAGACGTCACAAAGTTCCATGGAAGCTTC 681
Query 529 TAAAAAGAGAGACCAACGA-GGAAGT-AAGAAAGAGAGTCTACGTCTGTCCGGAGCCGAC 586
| |||||||| | |||| | || || |||||| ||||||| || || || || || ||
Sbjct 682 TTAAAAGAGACAACAAC-ATAGAGGTGAAGAAA-CGAGTCTATGTTTGCCCTGAACCCAC 739
Query 587 ATGTCTTCACCACAACCCTTGTCACGCGCTCGGAGATCTCGTGGGAATCAAGAAACACTT 646
|| |||||||| || |||||||| || || |||||||| || || ||||| ||||| ||
Sbjct 740 TTGCCTTCACCATAATCCTTGTCATGCTCTGGGAGATCTTGTCGGCATCAAAAAACA-TT 798
Query 647 TC-GACGGAAACATAGTAACCATAAGCAATGGATCTGCGAGCGATGCTCAAAAGGCTACG 705
|| || | |||||||||||||||||||||||| | || ||| ||||||| ||||| || |
Sbjct 799 TCAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAGAGATGCTCTAAAGGTTATG 858
Query 706 CCGTTCAATCTGATTACAAAGCTCATCTCAAAACCTGTGGCACTCGCGGCCACTCCTGTG 765
| |||||||||||||||||||||||||||||||| ||||| ||| | || || || ||||
Sbjct 859 CTGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGTACTAGAGGACATTCTTGTG 918
Query 766 ACTGCGGC--CGAGT-TT-TTTCCAGAGTGGAGAGTTTCATAGAGCACCAAGACAATTG 820
|||| || | | || ||| || ||||||||||| || || || ||||| |||||
Sbjct 919 ACTGTGGTTTCTTTTCTTCTTTT-AGGGTGGAGAGTTTTATTGAACATCAAGATAATTG 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84487517235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5