BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475908
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68120.1 | Symbols: BPC3, ATBPC3 | basic pentacysteine 3 | c... 1208 0.0
> AT1G68120.1 | Symbols: BPC3, ATBPC3 | basic pentacysteine 3 |
chr1:25526215-25527534 REVERSE LENGTH=949
Length=949
Score = 1208 bits (654), Expect = 0.0
Identities = 836/920 (91%), Gaps = 27/920 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaaCACAAAAAGATCGAATTCACCATCCTCGTGTAGTTTGATTATGATGGATGAA 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 8 AAAAAACACACAAAAAGATCGAATTCACCATCCTCGTGTAGTTTGATTATGATGGAAGAA 67
Query 61 GATGGATTGAGTAATCGAAATTGGGGTTATTACGAGCCGTCACAATTCAGGCCAAATTTA 120
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 68 GATGGATTGAATAATCGAAATTGGGGTTATTACGAGCCGTCACAATTCAGACCAAATCTA 127
Query 121 GGGTTTCAACTAATTCCAAGTATCATAAACAGAAACGAGAAGCCATTTCTCTCCCCTCAG 180
|||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 128 GGGTTTCAACTAATTCCAAGTATCTTAGACCGAAACGAGAAGCCATTTCTCTCCCCTCAT 187
Query 181 AATCAGAGTCTAAACAACTTCTTAACCCCTTCCAATGTCTATCGAGGCGATAGCAGCAGC 240
| ||||| ||| | |||||| |||| ||||||||||||||| | |||| |||||||||
Sbjct 188 AGTCAGAATCT--A-AACTTCATAACACCTTCCAATGTCTATGGTGGCGGTAGCAGCAGT 244
Query 241 GTTATGTCGTATCCGCTG-GATTATACTCTCTCTGATGCACCTTTCATGAGTTATAGTTG 299
||| |||||||||||| | ||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 245 GTTGTGTCGTATCCGC-GTGATTACACTGTCTCTGATGCACCATTCATGAGTTATAGTTG 303
Query 300 GTTGAACCAGCATAGAGATAGCAAGTTCTTCAGCAATGTACCTACGAATGCTTCTAGGAT 359
||| |||||||| | |||||||||||||||||||||||| ||| ||| | |||||||||
Sbjct 304 GTTAAACCAGCACAAAGATAGCAAGTTCTTCAGCAATGTTCCT--GAA-GTTTCTAGGAT 360
Query 360 GACTCA-TCCGATGCAGC-----C-G---GAGGTTGTGGGTGAGGTCGATGAGTCTCTTA 409
|||||| | ||||||||| | | ||||| ||| |||||| ||||||||| | |
Sbjct 361 GACTCAGT-CGATGCAGCTTTTGCAGCCCGAGGTGGTGACTGAGGTTGATGAGTCTGTCA 419
Query 410 AGAGAAGGCATTGTAGTGGTGGGCACAGA---GGTGCTCTTAAGGTGAAGAAAGAGAAGA 466
||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||
Sbjct 420 AGAGAAGGCATTGTAGTGGTGGGCAGAGAGGTGGTGTTCCTAAGGTGAAGAAAGAGAAGA 479
Query 467 AGCTGAAGGATAACAATATGCCAAGAGTGCAAAGAGCGAGAAGTCCGTTGTTGAGGAAGA 526
|||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 480 AGCTCAAGGATAACAATATGCCAAGAGTACAAAGAGAGAGAAGTCCTTTGTTGAGGAAGT 539
Query 527 GTGTAGAGATGGTGATTAATGGGGTTTCTATGGATATTGGAGGTTTACCAGTTCCGGTTT 586
|| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 GTATAGAGATGGTGATAAATGGTGTTTCTATGGATATTGGAGGTTTACCAGTTCCGGTTT 599
Query 587 GCTCTTGTACCGGGATGCCTCAACAGTGTTACAGATGGGGTTGCGGGGGATGGCAGTCTG 646
|||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 GCTCGTGTACCGGAATGCCTCAACAGTGTTACCGATGGGGTTGCGGGGGATGGCAGTCTG 659
Query 647 CGTGTTGTACCACTAATGTTTCGGTGTACCCTTTGCCGATTAGTACTAAAAGGCGTGGTG 706
| ||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||
Sbjct 660 CTTGTTGTACCACTAATGTTTCGATGTACCCTTTACCGGTTAATACTAAAAGGCGTGGTG 719
Query 707 CGAGGATTGCTGGAAGGAAAATGAGCCAAGGTGCTTTTAGGAAGGTTCTTGAGAAACTCT 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGAGGATTGCTGGAAGGAAAATGAGCCAAGGTGCTTTTAGGAAGGTTCTTGAGAAACTCT 779
Query 767 CTTCTGATGGTTTCGATTTCTCCAACCCTATCGATTTGAAGTCTCATTGGGCTAAACATG 826
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 780 CTTCTGATGGTTTTGATTTCTCAAACCCTATTGATTTGAAGTCTCATTGGGCTAAACATG 839
Query 827 GAACCAATAAGTTTGTCACCATCAGATAAA-AAC---GTC-GAACCTCTCTTTTGTCGAA 881
||||||||||||| |||||||||||||||| || ||| || ||||||||||||||||
Sbjct 840 GAACCAATAAGTTCGTCACCATCAGATAAATAAAAAAGTCTGAGCCTCTCTTTTGTCGAA 899
Query 882 AATCCCTTTTTGTTGTTGTT 901
||||||||||||||||||||
Sbjct 900 AATCCCTTTTTGTTGTTGTT 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5