BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475916
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68070.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 1858 0.0
> AT1G68070.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr1:25515232-25516868 REVERSE LENGTH=1313
Length=1313
Score = 1858 bits (1006), Expect = 0.0
Identities = 1187/1272 (93%), Gaps = 22/1272 (2%)
Strand=Plus/Plus
Query 1 TTTTGACTTTTGAGTGGTACTGATAGGTACAAAG-AA-AC-ACAAACCCTAGATTTATCT 57
|||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||
Sbjct 1 TTTTGACTTTTGAGTGGTACTGATAGGTAC-AAGAAACACAACAAACCCTAGATTTATCT 59
Query 58 TCATCTCTCTCAATTCTGTGTCAAGCGAAGACGGATTCAACGATGTCTTCACCTGAATCA 117
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 60 TCATCTCTCTCAATTCTGTATCAAGCAAAGACGGATTCAACGATGTCTTCACCTGAATCA 119
Query 118 CCTTCCGGTTCCGACTCATCCACACCACTTCTCCGTTCACGGCAATCATCACCACGTCGT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCTTCCGGTTCCGACTCATCCACACCACTTCTCCGTTCACGGCAATCATCACCACGTCGT 179
Query 178 CCACCTGTAATCGCGGTTCTATTAGGTCGAGCTTCAGGACGACGAGGAGCTTCGATGGTG 237
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 CAACCTGTAATCGCGGTTCTATTAAATCGAGCTTCAGGACGACGAGGAGCTTCGATGGTG 239
Query 238 GTTAGAGAGACAGCTGCTCAAGAGCTTGAAGAGCGACGAGCTGATTGGGGTTACTCGAAA 297
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTTAGAGAAACAGCTGCACAAGAGCTTGAAGAGCGACGAGCTGATTGGGGTTACTCGAAA 299
Query 298 CCCGTTGTTGCTTTGGACATGCTTTGGAACACTGCGTTTGTTGTTGTTGCGATTGTGATG 357
|| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 300 CCTGTTGTTGCTTTGGATATGCTTTGGAACACTGCTTTTGTTCTTGTTGCGATTGTTATG 359
Query 358 CTTTTGGTTTTTAAAGAAGAGAAGCCAAATGTTCCGATTAGGGTTTGGATCTGTGGTTAT 417
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 360 CTTTTGGTTTTTAAAGAAGAGAAGCCAAATGTTCCTATTAGGATTTGGATCTGTGGTTAT 419
Query 418 GCGATTCAGTGTCTTGTTCATGTTGTGCTTGTTTGGCTTGAGTTTAGGAAGAGGAATGCT 477
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 420 GCGATTCAGTGTCTTGTTCATGTTGTCCTTGTTTGGCTTGAGTTTAGAAAGAGGAATGCT 479
Query 478 AGGA-CTCGAACTGGGGATTTAGAAGCTGCTCAAGGTTCTGGTAATCAGGATAGTGAGGA 536
|| | | || |||| ||||||||||||||||||| | | | |||||||||||||| ||
Sbjct 480 AGAAGCA-GACCTGGAGATTTAGAAGCTGCTCAAGCTAC-G--AATCAGGATAGTGAAGA 535
Query 537 TGAGGATAACGATGAGAGGATTCTGAGCACTAAGACTTGTGAATCGATGAACACTATAAT 596
||| || |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 536 TGAAGACAACGATGAGAGGTTTCTGAGCACTAAGACTTGTGAATCAATGAACACTATAAT 595
Query 597 ATCATTTATCTGGTGGATTGTTGGCTTCTACTGGCTTGTATCTGGTGGTGATATCCTTCT 656
||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 596 ATCATTTGTCTGGTGGATTGTTGGATTCTACTGGCTTGTTTCTGGTGGTGATATCCTTCT 655
Query 657 GCAAAATGCGACGCATTTGTATTGGTTAACCTTTGTTTTCCTTGCATTTGATGTGTT-TT 715
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 656 GCAAAACGCGACGCATTTGTATTGGTTAACCTTTGTTTTCCTTGCATTTGATGTGTTCTT 715
Query 716 TCGCCATCTTTTGCGTTGTGTTGGCATGTCTTATCGGAATCGCCCTCTGTTGCTGCCTCC 775
| |||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |
Sbjct 716 T-GCCATCTTTTGCGTTGTGCTGGCATGTCTTATTGGAATCGCCCTCTGTTGTTGCCTAC 774
Query 776 CTTGTATTATTGCTCTTCTTTACGCCGTTGCCGGGCAGGAGGGTGCATCAGAAGCAGATC 835
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 775 CTTGTATTATTGCTCTTCTTTACGCCGTCGCGGGGCAGGAGGGTGCATCAGAAGCAGATC 834
Query 836 TCAGCATCCTTCCCAAGTACAGGTTTCAGGCGCTGAACAATGATGAAAAGCAAAGTGATG 895
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 835 TCAGCATCCTTCCCAAGTACAGGTTTCACACGATGAACAATGATGAAAAGCAAAGTGACG 894
Query 896 GTGGTGGGAAAATGATACCCGTCGAGGCAG-GCAGTGAGAATTTGGGAAATGAACGTGTG 954
||||||||||||||||||| || || |||| | ||||||||||| ||||| || ||||||
Sbjct 895 GTGGTGGGAAAATGATACCTGTGGATGCAGCG-AGTGAGAATTTAGGAAACGAGCGTGTG 953
Query 955 CTTCTTCCCGAAGATGCTGACTGTTGCATATGTCTGAGTTCATATGAAGATGGAGCAGAG 1014
||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 954 CTTCTTCCCGAGGATGCTGACTGTTGTATATGTTTGAGTTCATATGAAGATGGAGCAGAG 1013
Query 1015 CTGGTCTCACTTCCTTGCAACCACCACTTTCATTCGACGTGCATCGTGAAATGGCTGAAA 1074
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1014 CTGGTCTCACTTCCTTGCAACCACCACTTTCATTCTACGTGCATTGTGAAATGGCTGAAA 1073
Query 1075 ATGAATGCGACATGTCCACTGTGCAAGTTCAATATTCTCAAAGGTAATGAACAAGAATGA 1134
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1074 ATGAATGCGACATGTCCACTATGCAAGTTCAATATCCTCAAAGGTAATGAACAAGAATGA 1133
Query 1135 AGTAATATAGAGGAAGCTTTTCATCtttttttATGTTGTGTTG-TTTTTGTTGTATAGAG 1193
|||||| |||||||| |||||| ||||||| |||||||||| ||||||||||||| ||
Sbjct 1134 AGTAATGTAGAGGAAACTTTTCTTCTTTTT--ATGTTGTGTTTCTTTTTGTTGTATATAG 1191
Query 1194 AGAGTAGAGaaaaaaaaGAAAATGATTATGTCGTTTGTGTAAGTCATAAGACAAATTGTT 1253
|| ||||||||||| |||||||||| ||| |||||| ||||||||||||| |||||
Sbjct 1192 AG--TAGAGAAAAAA--GAAAATGATTGTGTTGTTTGT--AAGTCATAAGACAGTTTGTT 1245
Query 1254 TCTTTGTTGAAA 1265
||||||||||||
Sbjct 1246 TCTTTGTTGAAA 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62198475255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5