BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475919
Length=2063
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68050.1 | Symbols: ADO3, FKF1 | flavin-binding, kelch repea... 3070 0.0
AT5G23410.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 580 1e-164
AT5G42730.1 | Symbols: | pseudogene similar to ACT domain-cont... 544 2e-153
> AT1G68050.1 | Symbols: ADO3, FKF1 | flavin-binding, kelch repeat,
f box 1 | chr1:25508676-25510889 FORWARD LENGTH=2113
Length=2113
Score = 3070 bits (1662), Expect = 0.0
Identities = 1960/2097 (93%), Gaps = 47/2097 (2%)
Strand=Plus/Plus
Query 1 AGAAGAAGAAGATA-TT-TAAAATGGCGAGAAAACAT-GCGACTG-A-AT-CGATCGGAG 54
|||||||||||||| || | || ||||||||| || |||| | | || |||||||||
Sbjct 30 AGAAGAAGAAGATATTTCTGTAA--GCGAGAAAA-ATGGCGAGAGAACATGCGATCGGAG 86
Query 55 AAGTCACCGGAAAACGaaaaaaaCGCGGCAGAGTTGAAGAAGAAGGAGGCAT-C--T-AT 110
||| ||||||||||||||| |||||||||||||||||||||| | || | || | | |
Sbjct 87 AAGCCACCGGAAAACGAAAGAAACGCGGCAGAGTTGAAGAAGCA-GAAGAATACTGTAAC 145
Query 111 GATGGAATCGAA-AACCAAGATGTAGTAGAAGATGGGAAGCTTCCATTAGAAG-TGAGGA 168
|||||||||||| || | | | |||| || |||| ||||||||| ||||| | || |||
Sbjct 146 GATGGAATCGAAGAA-C-A-A-GTAG-AG--GATGAGAAGCTTCCGTTAGAGGTTG-GGA 197
Query 169 TGGTCTATTACCCAGTGACTCCTCCTTCGTTCATTGTATCCGATGCTCTGGAGCCAGATT 228
|| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 198 TGTTCTATTACCCAATGACTCCGCCTTCGTTCATTGTTTCCGATGCTCTGGAGCCAGATT 257
Query 229 TTCCTTTGATCTATGTCAACAGAGTCTTCGAAGTCTTCACTGGTTATCGTGCCGATGAAG 288
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 258 TTCCTTTGATCTATGTCAACAGAGTCTTCGAAGTCTTCACTGGCTATCGTGCCGATGAAG 317
Query 289 TTCTTGGTCGTAACTGTCGATTTTTACAGTATAGGGATCCTCGAGCTCAAAGGCGTCACC 348
|||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct 318 TTCTTGGTCGTAACTGTCGATTCCTACAGTACAGAGATCCTCGAGCTCAAAGGCGTCACC 377
Query 349 CATTGGTTGATCCTGTTGTTGTATCTGAGATAAGGAGATGTCTTGAAGAAGGTATTGAAT 408
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 378 CATTGGTTGATCCTGTGGTTGTATCTGAGATTAGGAGATGTCTTGAAGAAGGTATTGAAT 437
Query 409 TCCAAGGAGAGCTTCTCAATTTCAGAAAGGATGGTACTCCGTTGGTTAACAGACTACGGC 468
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 438 TCCAAGGAGAGCTTCTTAATTTCAGAAAAGATGGTACTCCTTTGGTTAACAGACTACGGC 497
Query 469 TTGCTCCAATACGTGACGATGATGGAACGGTTACACATGTAATTGGGATACAGGTCTTCT 528
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 498 TTGCTCCAATACGTGACGATGATGGAACCATTACACACGTAATTGGGATACAGGTCTTCT 557
Query 529 CTGAAACGACTATAGACCTTGAGCGTGTTTCATATCCTGTGTTCAAACATAAACAACAGC 588
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 558 CTGAAACGACTATAGACCTTGACCGTGTCTCGTATCCTGTGTTCAAACATAAACAACAGC 617
Query 589 TTGATCAGACATCTCAGTGCTTGCTTCCAGGTGGAAGCCCGAGGTTTAAGGAGCATCATG 648
||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 618 TTGATCAAACATCTGAGTGCTTGTTTCCAAGTGGAAGCCCGAGGTTTAAGGAGCATCATG 677
Query 649 AAGATTTCTGTGGGATATTGCAGCTGTCTGATGAAGTCTTGGCGCATAACATCTTATCTC 708
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 678 AAGATTTCTGTGGGATATTGCAGCTATCTGATGAAGTTTTGGCTCATAACATCTTATCTC 737
Query 709 GGTTAACTCCAAGAGACGTTGCTTCAATTGGTTCTGCCTGCAGGAGGTTGAGGCAGTTGA 768
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 738 GGTTAACTCCAAGGGACGTTGCTTCAATTGGTTCTGCTTGCAGGAGGTTGAGGCAGTTGA 797
Query 769 CGAAAAACGAGAGCGTGAGGAAGATGGTGTGTCAGAATGCGTGGGGAAAAGAGATAACTG 828
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 798 CGAAGAACGAGAGTGTGAGGAAGATGGTATGTCAGAATGCGTGGGGAAAAGAGATAACTG 857
Query 829 GAACACTGGAGATTATGACTAAGAAGCTAGGATGGGGTCGGTTAGCTAGAGAGCTCACCA 888
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 858 GAACACTGGAGATTATGACTAAGAAGCTAAGATGGGGTCGGTTAGCTAGAGAGCTCACCA 917
Query 889 CTCTTGAAGCTGTCTGTTGGCGCAAATTTACTGTTGGAGGGATTGTACAACCTTCCCGCT 948
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 918 CTCTTGAAGCTGTGTGTTGGCGTAAATTTACTGTTGGAGGGATTGTACAACCTTCCCGCT 977
Query 949 GCAATTTCAGCGCGTGTGCTGTTGGGAACCGGCTTGTGCTATTTGGCGGGGAAGGGGTTA 1008
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 978 GCAATTTCAGCGCGTGTGCTGTTGGGAACCGGCTTGTGCTATTTGGTGGGGAAGGGGTTA 1037
Query 1009 ACATGCAGCCATTGGATGATACTTTTGTTCTCAATCTTGATGCAGAGTATCCTGAGTGGC 1068
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1038 ACATGCAGCCATTGGATGATACTTTTGTTCTCAATCTTGATGCAGAGTGTCCTGAGTGGC 1097
Query 1069 AACGTGTGAGGGTGACATCCTCGCCTCCAGGACGTTGGGGACACACTCTCTCGTGTCTCA 1128
| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 1098 AGCGTGTGAGGGTGACGTCGTCGCCTCCAGGACGTTGGGGACACACACTCTCGTGTCTCA 1157
Query 1129 ACGGGTCGTGGTTAGTAGTCTTTGGAGGGTGTGGAAGACAAGGATTGCTTAATGACGTAT 1188
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1158 ACGGGTCGTGGTTGGTAGTCTTTGGAGGGTGTGGAAGACAAGGATTGCTTAATGATGTAT 1217
Query 1189 TTGTGCTTGATCTAGACGCTAAGCATCCCACATGGAAGGAAGTAGCAGGAGGAACTCCTC 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TTGTGCTTGATCTAGACGCTAAGCATCCCACATGGAAGGAAGTAGCAGGAGGAACTCCTC 1277
Query 1249 CATTGCCAAGATCTTGGCACAGCTCGTGCACCATTGAAGGCTCTAAACTGGTTGTCTCAG 1308
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1278 CATTGCCAAGATCTTGGCACAGCTCGTGCACCATTGAGGGCTCTAAACTGGTTGTCTCAG 1337
Query 1309 GTGGCTGCACAGACGCTGGGGTGCTTCTCAGCGACACCTTCTTGTTGGATTTGACAACAG 1368
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1338 GTGGCTGCACAGACGCTGGAGTGCTTCTCAGCGACACCTTCTTGTTGGATCTGACAACAG 1397
Query 1369 ATAAACCGACATGGAAAGAGATCCCAACATCATGGGCTCCTCCTTCTAGACTTGGGCATT 1428
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1398 ATAAACCGACATGGAAAGAGATCCCGACATCATGGGCTCCTCCTTCTAGACTTGGGCATT 1457
Query 1429 CTCTATCGGTCTTTGGTCGGACTAAAATCCTAATGTTTGGCGGACTTGCAAATAGCGGTC 1488
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1458 CTTTATCGGTCTTTGGTCGGACTAAAATCCTAATGTTTGGCGGGCTTGCAAATAGTGGTC 1517
Query 1489 ATCTAAAGTTAAGGTCAGGGGAGGCATACACTATAGACTTGGAGGATGAAGAACCAAGAT 1548
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 ATCTAAAGCTAAGGTCAGGGGAGGCATACACTATAGACTTGGAGGATGAAGAACCAAGAT 1577
Query 1549 GGAGAGAGCTTGAGTGTAGCGCGTTCACAGGCGCAGTTGTACCGCCTCCAAGACTGGACC 1608
|||||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||
Sbjct 1578 GGAGAGAGCTTGAGTGTAGCGCATTCCCAGGCGTGGTTGTACCGCCTCCAAGACTAGACC 1637
Query 1609 ACGTGGCTGTGAGCATGCCATGCGGTAGGGTCATCATCTTTGGAGGGTCTATTGCAGGGC 1668
| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 1638 ATGTGGCTGTGAGCATGCCGTGTGGTAGGGTCATCATCTTTGGAGGGTCGATTGCAGGGC 1697
Query 1669 TTCACTCTCCTTCACAACTGTTCCTTATAGATCCTGCAGAAGAGAAACCGTCATGGAGGA 1728
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1698 TTCACTCTCCTTCGCAACTGTTTCTAATAGATCCTGCAGAAGAGAAACCGTCATGGAGGA 1757
Query 1729 TCCTGAATG-CCCCGGGGAAACCACCCAAATTAGCTTGGGGACATAGCACATGCGTTGTT 1787
||||||||| ||||||| ||||| || || ||||||||||||||||||||||||||||||
Sbjct 1758 TCCTGAATGTCCCCGGG-AAACCGCCTAAGTTAGCTTGGGGACATAGCACATGCGTTGTT 1816
Query 1788 GGAGGAACTAGAGTTTTGGTCCTTGGTGGTCACACTGGTGAGGAATGGATACTCAGTGAA 1847
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1817 GGAGGAACTAGAGTATTGGTCCTTGGTGGTCACACTGGTGAGGAATGGATACTCAATGAA 1876
Query 1848 TTACATGAACTCTGCTTGGCTAGCCGCCAAGACTCAGATCTGTAAAGTCTCTTTCCTTCT 1907
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1877 TTACATGAACTCTGCTTGGCTAGCCGGCAAGACTCGGATCTGTAAAGACTCTTTCCTTCT 1936
Query 1908 TCATTTGGTTTGTGGTTTTGTGTATGTCACATTCCAAACTCTTACTACATGTAGAAGAGA 1967
||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct 1937 TCATTTGGTTTGTGGTTTTGTATCTGTCACATTCCAAACTCTTACGACATGTAGAAGAGA 1996
Query 1968 T----C-G----T-G-----TGT--ACATAGTAAATTAGTGATTGTTGTGCGCTTTAG-- 2008
| | | | | ||| |||||||||||||||||||||||| ||||||||
Sbjct 1997 TATATCAGAAGCTAGAAGCGTGTGTACATAGTAAATTAGTGATTGTTGTACGCTTTAGAT 2056
Query 2009 -G-TATTCATGTAATGTTAATGGTTTTGCTGTATGAAGATCCTTTTATAGTATACTT 2063
| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 2057 AGATATTCATGTAATGTTAATGGTTTTGCTGTATGAAGATCCTTCTATAATATACTT 2113
> AT5G23410.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1); signal
transducer/ two-component sensor/ ubiquitin-protein ligase
(TAIR:AT1G68050.1); Has 53 Blast hits to 53 proteins in
8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr5:7885591-7886785 REVERSE LENGTH=959
Length=959
Score = 580 bits (314), Expect = 1e-164
Identities = 412/457 (90%), Gaps = 15/457 (3%)
Strand=Plus/Plus
Query 1611 GTGGCTGTGAGCATGCCATGCGGTAGGGTCATCATCTTTGGAGGGTCTATTGCAGGGCTT 1670
|||| |||||| ||||| || ||||||||||||||| || ||||||||||||||||||||
Sbjct 476 GTGGTTGTGAGAATGCCGTGTGGTAGGGTCATCATC-TTAGAGGGTCTATTGCAGGGCTT 534
Query 1671 CACTCTCCTTCACAACTGTTCCTTATAGATCCTGCAGAAGAGAAACCGTCATGGAGGATC 1730
||||||||||| ||||| ||||| ||||||||| || |||||||||||||||||||||||
Sbjct 535 CACTCTCCTTCGCAACTATTCCTAATAGATCCTTCAAAAGAGAAACCGTCATGGAGGATC 594
Query 1731 CTGAATGCCCCGGGGAAACCACCCAAATTAGCTTGGGGACATAGCACATGCGTTGTTGGA 1790
||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 595 CTGAATGTCCCAGGGAAACCACCCAAGTTAGCTTGGGGACATAGCACATGCGTTGTTGGA 654
Query 1791 GGAACTAGAGTTTTGGTCCTTGGTGGTCACACTGGTGAGGAATGGATACTCAGTGAATTA 1850
||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 655 GGAACTAGAGTATTGGTCCTTGGTGGTCACAATGGTGAGGAATGGATACTCAATGAATTA 714
Query 1851 CATGAACTCTGCTTGGCTAGCCGCCAAGACTCAGATCTGTAAAGTCTCTTTCCTTCTTCA 1910
||||||||||||||||||||| | |||||||| ||||||||||| |||||||||| ||||
Sbjct 715 CATGAACTCTGCTTGGCTAGCTGGCAAGACTCGGATCTGTAAAGACTCTTTCCTTATTCA 774
Query 1911 TTTGGTTTGTGGTTTTGTGTATGTCACATTCCAAACTCTTACT-ACATGTAGAAGAGATC 1969
|||||||||||||| ||| | |||||||||||||||||||| | ||| | | | | |
Sbjct 775 TTTGGTTTGTGGTTATGTATCTGTCACATTCCAAACTCTTA-TGACA-G-A-A-G----C 825
Query 1970 GTGTGTACATAGTAAATTAGTGATTGTTGTGCGCTTTAGGTATTCATGTAATG-T-T-AA 2026
|||||||||||||||||||||||||||||| |||||||| |||| |||||||| | | ||
Sbjct 826 GTGTGTACATAGTAAATTAGTGATTGTTGTACGCTTTAGATATTAATGTAATGATGTTAA 885
Query 2027 TGGTTTTGCTGTATGAAGATCCTTTTATAGTATACTT 2063
||| |||||||||||| ||||||| |||| |||||||
Sbjct 886 TGGGTTTGCTGTATGA-GATCCTTCTATAATATACTT 921
> AT5G42730.1 | Symbols: | pseudogene similar to ACT domain-containing
protein, similar to F-box family protein | chr5:17133085-17134215
FORWARD LENGTH=1131
Length=1131
Score = 544 bits (294), Expect = 2e-153
Identities = 387/430 (90%), Gaps = 14/430 (3%)
Strand=Plus/Plus
Query 1611 GTGGCTGTGAGCATGCCATGCGGTAGGGTCATCATCTTTGGAGGGTCTATTGCAGGGCTT 1670
|||| |||||| ||||| || ||||||||||||||| || ||||||||||||||||||||
Sbjct 712 GTGGTTGTGAGAATGCCGTGTGGTAGGGTCATCATC-TTAGAGGGTCTATTGCAGGGCTT 770
Query 1671 CACTCTCCTTCACAACTGTTCCTTATAGATCCTGCAGAAGAGAAACCGTCATGGAGGATC 1730
||||||||||| | ||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 771 CACTCTCCTTCGCTACTGTTCCTAATAGATCCTTCAAAAGAGAAACCGTCATGGAGGATC 830
Query 1731 CTGAATGCCCCGGGGAAACCACCCAAATTAGCTTGGGGACATAGCACATGCGTTGTTGGA 1790
|| |||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 831 CTAAATGTCCCAGGGAAACCACCCAAGTTAGCTTGGGGACATAGCACATGCGTTGTTGGA 890
Query 1791 GGAACTAGAGTTTTGGTCCTTGGTGGTCACACTGGTGAGGAATGGATACTCAGTGAATTA 1850
||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 891 GGAACTAGAGTATTGGTCCTTGGTGGTCACAATGGTGAGGAATGGATACTCAATGAATTA 950
Query 1851 CATGAACTCTGCTTGGCTAGCCGCCAAGACTCAGATCTGTAAAGTCTCTTTCCTTCTTCA 1910
||||||||||||||||||||| | |||||||| ||||||||||| |||||||||| ||||
Sbjct 951 CATGAACTCTGCTTGGCTAGCTGGCAAGACTCGGATCTGTAAAGACTCTTTCCTTATTCA 1010
Query 1911 TTTGGTTTGTGGTTTTGTGTATGTCACATTCCAAACTCTTACT-ACATGTAGAAGAGATC 1969
||| |||||||||| ||| | |||||||||||||||||||| | ||| | | | | |
Sbjct 1011 TTTAGTTTGTGGTTATGTATCTGTCACATTCCAAACTCTTA-TGACA-G-A-A-G----C 1061
Query 1970 GTGTGTACATAGTAAATTAGTGATTGTTGTGCGCTTTAGGTATTCATGTAATG-T-T-AA 2026
|||||||||||||||||||||||||||||| |||||||| |||| |||||||| | | ||
Sbjct 1062 GTGTGTACATAGTAAATTAGTGATTGTTGTACGCTTTAGATATTAATGTAATGATGTTAA 1121
Query 2027 TGGTTTTGCT 2036
||||||||||
Sbjct 1122 TGGTTTTGCT 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102258510165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5