BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475920
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68040.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1677 0.0
> AT1G68040.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:25502876-25505232
FORWARD LENGTH=1100
Length=1100
Score = 1677 bits (908), Expect = 0.0
Identities = 1033/1094 (94%), Gaps = 5/1094 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGTGGAGATTGTTCTTAATTCACTTCCTATGAGTGGAGGAGATGGTCCGAAC 60
||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGAAAAGTGGAGATTGTTCGTAACTCACTTCCTATGAGTGGGGGAGATGGTCCGAAC 60
Query 61 AGCTACTCTAAGAATTCTCATTTGCAGAGAAGAACAACAAGTTTGTTGAAAGAGACAATA 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 61 AGCTACTCTAAGAATTCTCATTTGCAGAGAAAAACAACAAGTTTGTTGAAAGAGAAAATA 120
Query 121 GACAAATTGATATTAGAGAAACTCAATGCAAAAACCCTAA--TC-TCTGACTCCAACACA 177
|||||| || |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 121 GACAAACTGGTATTAGAGAAACTCAATGCAAAAACCCTAATCTCATCTGACTCCAACACA 180
Query 178 TTCCACATAGCCGATCTTGGTTGTGCAACAGGACCAAACACATTCTTTCTCGTTGACGAC 237
|||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 181 TTCCGGATAGCCGATCTTGGTTGTGCAACTGGACCAAATACATTCTTTCTCGTTGACAAC 240
Query 238 ATCATCAAATCCGTTGAAACCAGCTTAAGAAAATCAAACTCCTCAAAACCAGAGTTTCTT 297
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ATCATCAAATCCATTGAAACCAGCTTAAGAAAATCAAACTCGTCAAAACCAGAGTTTCTT 300
Query 298 GTCTTCTTCAACGACCTCCCACAAAATGACTTCAACACTCTCTTCACATCTCTCCCTCAA 357
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GTCTTCTTCAACGACCTCCCACAAAACGACTTCAACACTCTCTTCACATCTCTCCCTCAA 360
Query 358 GACCGGAGTTACTTCGCGGTCGGGGTCCCGGGTTCGTTCTATGGCCGTGTTCTTCCTCAA 417
|||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 361 GACCGGAGTTACTTGGCGGTCGGAGTCCCGGGTTCGTTCTACGGCCGTGTCCTTCCTCAA 420
Query 418 TCCTCCGTTCATATGGTAGTGACAG-TTGGGGCCACACATTGGCTATCGAGTGTTCCGAA 476
|||||||||||||| |||||||| | | ||||||||||| |||||||||||||| || ||
Sbjct 421 TCCTCCGTTCATATTGTAGTGAC-GATGGGGGCCACACACTGGCTATCGAGTGTACCAAA 479
Query 477 GGAGGTGTTGGACAAACCCTCCAAGGCGTGGAATAAAGGCAAGGTTCACTACTCAAATGC 536
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGAGGTGTTGGACAAAAGCTCCAAGGCGTGGAATAAAGGCAAGGTTCACTACTCAAATGC 539
Query 537 CGCGGAGGAAGTTGTGAAGGCTTATAGAGATCAGTTTGGTCGGGACATGGAGAAGTTTCT 596
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGCGGATGAAGTTGTGAAGGCTTATAGAGATCAGTTTGGTCGGGACATGGAGAAGTTTCT 599
Query 597 AGAAGCTAGAGCTAAAGAAATAGTAAGTGGAGGTCTTTTGGTTGTTGGAATGTGTGGTAT 656
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 AGAAGCTAGGGCTACAGAAATAGTAAGTGGAGGTCTTTTGGTTGTTGGAATGTGTGGGAT 659
Query 657 ACCTAAAGGAATGCCTTTCTCCAATCTTGCCGACAGTATCATGTATACGTCCATGGCTGA 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCCTAAAGGAATGCCTTTCTCCAATCTTGCCGACAGTATCATGTATACGTCCATGGCTGA 719
Query 717 TGTTCTCACTCAAATGCAATCCCAGGGTTTGATCAGCGAAGAGCAAGTCGATACCTTTAA 776
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 720 TGTTCTCACTCAAATGCATTCCGAGGGTTTGATCAGCGAAGAGCAAGTCGATACCTTCAA 779
Query 777 CATACCTATATACTCGGCATCGCCTGAGGAGGTAACAGTCTTGGTCGAGAAAAATGGATG 836
||||||||| ||||| ||| |||||||||||||||||||| |||| | ||||||||||||
Sbjct 780 CATACCTATCTACTCAGCAACGCCTGAGGAGGTAACAGTCCTGGTAGTGAAAAATGGATG 839
Query 837 CTTCACTGTCGCATCGATGGAGCTGATGAACCCCACGGCCTGGCTCAAACGGCCAATGAA 896
||||||||||| ||| |||||||||||| |||| |||||||||||||||||||| | |||
Sbjct 840 CTTCACTGTCGAATCTATGGAGCTGATGGACCCAACGGCCTGGCTCAAACGGCCGACGAA 899
Query 897 CGTGGAGGATGTTAGGCATTGGATGGTTTGCATAAAGGCCACAATGGGATCTCTCTTCAT 956
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 CGTGGAGGATGTTAGGCATTGGATGGTTTGCATAAAGGCAACAATGGGATCTCTCTTCAT 959
Query 957 CAACCATTTCGGTGAACATCTCCTTGACGAAATCTTCGACCGTCTCACCGCAAAACTTGT 1016
||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 960 CAACCATTTTGGTGAACATCTCCTCGACGATGTCTTCGACCGTCTCACCGCAAAACTGGT 1019
Query 1017 TGGACTCACCGAGAAGATTGAATCTAGCTACCGTGAGAAGGTCATGTTGTTCTTTGCGTT 1076
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGACTCACCGAGAAAATTGAATCCAGCTACCGTGAGAAGGTCATGTTGTTCTTTGCGTT 1079
Query 1077 GCAACGAAAATAAA 1090
||||||||||||||
Sbjct 1080 GCAACGAAAATAAA 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53463580425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5