BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475923
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68000.1 | Symbols: ATPIS1, ATPIS, PIS1 | phosphatidylinosit... 1620 0.0
AT4G38570.1 | Symbols: PIS2 | probable CDP-diacylglycerol--inos... 684 0.0
> AT1G68000.1 | Symbols: ATPIS1, ATPIS, PIS1 | phosphatidylinositol
synthase 1 | chr1:25491014-25493053 FORWARD LENGTH=1005
Length=1005
Score = 1620 bits (877), Expect = 0.0
Identities = 971/1014 (96%), Gaps = 16/1014 (2%)
Strand=Plus/Plus
Query 1 GAATGTTCAAGAGCTGCCAGATTGAGAATATTTCGTCCGTCGTTGGAAACTTGAGAATAG 60
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GAATGTTCAAAAGCTGCCAGATTGAGAATATTTCGTCCGTCGTT-GAAACTTGAGAATAG 59
Query 61 CGGCGAATCTGGTTCGA-TTTGGGTCCCAATTGAAGA-TTCTGAAGCTCCTTTTGACTCC 118
|||||||||||||||| || |||| ||||||||| | || |||||||||||||||
Sbjct 60 AGGCGAATCTGGTTCGAGTTAGGGTTCCAATTGAAAAGTT-TGAAGCTCCTTTTGA---- 114
Query 119 TTCTACATCTCTCTCTTCTAGATCTCGACAACTCTAACCTCTTCGATTTGGTGGATCTTG 178
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 --CT-C-TCTCTCTCTTCTAGATCTCGACAACTCTAACCTCTTCGATTTGGTGGATCTTG 170
Query 179 AGAAATTGA-TTTAGTTCAAAGC-TCTGATGGCTAAAAAGGAGAGACCTAGACCCGAGAA 236
||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 171 AGAAATTGATTTTAGTTCAAAGCTTCTGATGGCTAAAAAGGAGAGACCTAGACCTGAGAA 230
Query 237 GTTGTCTGTGTATCTTTATATACCTAATATTGTTGGGTACATGAGAGTTCTCTTGAACTG 296
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 231 GTTGTCTGTGTATCTTTATATACCTAATATTGTTGGGTATATGAGAGTTCTCTTGAACTG 290
Query 297 TGTTGCTTTTGCTGTGTGTTTCTCCAACAAGACACTTTTCTCGGTCCTTTATTTCTTCAG 356
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 291 TGTTGCTTTTGCTGTGTGTTTCTCCAACAAGCCACTTTTCTCTGTCCTTTATTTCTTCAG 350
Query 357 CTTTTGTTGTGATGCTGTGGATGGCTGGGTCGCTCGTAGATTCAACCAAGTTTCAACATT 416
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 351 CTTTTGTTGTGATGCTGTGGATGGCTGGGTGGCTCGTAGATTCAACCAAGTTTCAACATT 410
Query 417 TGGAGCTGTTCTTGACATGGTCACAGATAGAGTTAGCACGGCTTGTCTACTCGTGATTCT 476
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 411 TGGAGCTGTTCTTGACATGGTCACAGATAGAGTTAGCACGGCTTGTCTTCTCGTGATTCT 470
Query 477 CTCTCAGATCTACAGGCCTAGCTTGGTCTTCCTCTCATTGCTGGCTTTAGATATTGCTAG 536
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 471 CTCTCAAATCTACAGGCCTAGTTTGGTCTTCCTCTCATTGCTGGCTTTAGATATTGCTAG 530
Query 537 TCACTGGCTGCAGATGTACAGTACGTTTCTAGCAGGGAAGAGCAGCCATAAGGATGTGAA 596
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TCATTGGCTGCAGATGTACAGTACGTTTCTAGCAGGGAAGAGCAGCCATAAGGATGTGAA 590
Query 597 AGACAGCACAAGCTGGCTTTTTAGACTCTACTATGGAAACCGGATATTTATGTGTTATTG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 591 AGACAGCACAAGCTGGCTTTTTAGACTCTACTATGGAAACCGGATATTTATGTGTTACTG 650
Query 657 CTGTGTTTCTTGCGAGGTTCTGTATATCATCCTTCTTCTCATTGCAAAGAACCAATCCGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 651 CTGTGTTTCTTGCGAGGTTCTGTATATCATCCTTCTTCTCATTGCAAAGAACCAATCTGA 710
Query 717 AAATCTCCTGAATGTCGTAGTTACCACATTAACACAGATTTCACCACTCTCTTTTCTCCT 776
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 711 AAATCTCCTGAATGTCGTAGTTGCTACATTAACACAGATTTCACCACTCTCTTTTCTCCT 770
Query 777 GGCGTTGACATTGTTCGGTTGGTCGATGAAGCAGACCGTTAATGTCATTCAGATGAAAAC 836
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 771 GGCTTTGACATTGTTCGGTTGGTCGATGAAGCAGACCATTAATGTCATTCAGATGAAAAC 830
Query 837 TGCTGCAGACGTTTGTGTACTGTATGATATAGAGAAGCAGCAGAAGCCTTGATCATCTTC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TGCTGCAGACGTTTGTGTACTGTATGATATAGAGAAGCAGCAGAAGCCTTGATCATCTTC 890
Query 897 CTTTTTCTCAACCTGAAACTCTTCTTCTTT-TTTAACTGTTTGTGCTCTTTTCACTGTGG 955
|||| |||||||||||||||||| || ||| ||| | ||||||| |||||||||||||||
Sbjct 891 CTTTGTCTCAACCTGAAACTCTTTTT-TTTCTTTCATTGTTTGTTCTCTTTTCACTGTGG 949
Query 956 ATGTAGATAATTGTTTTTAATGAGATGAAGAAATATTGTTTTGCCTTTTGACAT 1009
||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 950 ATGTAGATAATTGTTTTTAATGAAATGAAGAAATATTGATTTGCCTTTTGACAT 1003
> AT4G38570.1 | Symbols: PIS2 | probable CDP-diacylglycerol--inositol
3-phosphatidyltransferase 2 | chr4:18031279-18033563
REVERSE LENGTH=1109
Length=1109
Score = 684 bits (370), Expect = 0.0
Identities = 577/675 (85%), Gaps = 21/675 (3%)
Strand=Plus/Plus
Query 226 AGACCCGAGAAGTTGTCTGTGTATCTTTATATACCTAATATTGTTGGGTACATGAGAGTT 285
||||| | || |||||| || || || || || || ||||| ||||||||||||||||||
Sbjct 303 AGACCGGCGACGTTGTCAGTCTACCTCTACATTCCCAATATCGTTGGGTACATGAGAGTT 362
Query 286 CTCTTGAACTGTGTTGCTTT-TGCTGTGTGTTTCTCCAACAAGACACTTTTCTCGGTCCT 344
||||||||||| |||| || | ||||||| ||||||||||||||||| ||||| || |
Sbjct 363 CTCTTGAACTGCATTGCCTTCT-CTGTGTGCTTCTCCAACAAGACACTCTTCTCCCTC-T 420
Query 345 T-TA-TTTCTTCAGCTTTTGTTGTGATGCTGTGGATGGCTGG-GTCGCTCGTAGATTCAA 401
| || ||| ||||| ||||||||||||||||||||||| ||| | |||||||| ||| ||
Sbjct 421 TGTACTTT-TTCAGTTTTTGTTGTGATGCTGTGGATGGATGGTG-CGCTCGTAAATTTAA 478
Query 402 CCAAGTTTCAACATTTGGAGCTGTTCTTG-ACATGGTCACAGATAGAGTTAGCACGGCTT 460
|||||| || ||||||||||||||| ||| | ||||| ||||||||||| ||||| || |
Sbjct 479 CCAAGTCTCTACATTTGGAGCTGTT-TTGGATATGGTTACAGATAGAGTCAGCACAGCCT 537
Query 461 GTCTACTCGTGATTCTCTCTCAGATCTACAGGCCTAGCTTGGTCTTCCTCTCATTGCTGG 520
|||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 538 GTCTTCTCGTGATTCTCTCCCAGATATACAGGCCTAGCTTGGTTTTCCTGTCATTGCTGG 597
Query 521 CTTTAGATATTGCTAGTCACTGGCTGCAGATGTACAGTACGTTTCTAGCAGGGAAGAGCA 580
|||||||||| ||||||||||||||||| ||||||||||| || ||| ||||||||| ||
Sbjct 598 CTTTAGATATCGCTAGTCACTGGCTGCAAATGTACAGTACCTTCCTATCAGGGAAGACCA 657
Query 581 GCCATAAGGATGTGAAAGACAGCACAAGCTGGCTTTTTAGACTCTACTATGGAAACCGGA 640
||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||
Sbjct 658 GCCATAAGGATGTGAAAGATAGCACGAGCTGGCTCTTTAGACTCTATTATGGAAACCGGA 717
Query 641 TATTTATGTGTTATTGCTGTGTTTCTTGCGAGGTTCTGTATATCATCCTTCTTCTCATTG 700
| || ||| |||||||||||||||| ||||||||||| ||||| |||||||||||||| |
Sbjct 718 TGTTCATGGGTTATTGCTGTGTTTCCTGCGAGGTTCTTTATATAATCCTTCTTCTCATAG 777
Query 701 CAAAGAACCAATCCGAAAATCTCC-TGAATGTCGTAGTTACCA-CATTAACACAGATTTC 758
||| ||||||| ||||||| || |||| || ||||| | | |||| | ||||||||
Sbjct 778 CAACGAACCAAACCGAAAA-CTTGATGAACGTGGTAGTGAA-ATCATTGATGCAGATTTC 835
Query 759 ACCACTCTCTTTTCTCCTGGCGTTGA-CAT-TGTTCGGTTGGTCGATGAAGCAGACCGTT 816
||| |||||||| ||| |||| |||| ||| | || |||||||| || ||||||| | |
Sbjct 836 ACCGCTCTCTTTACTCTTGGCTTTGAGCATAT-TT-GGTTGGTCCATCAAGCAGATCATC 893
Query 817 AATGTCATTCAGATGAAAACTGCTGCAGACGTTTGTGTACTGTATGATATAGAGAAGCAG 876
||||| |||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct 894 AATGTGATTCAGATGAAAACGGCTGCAGATGTTTGTGTCCTGTATGACATAGAGAAACAG 953
Query 877 CA---GAAGCCTTGA 888
|| ||||||||||
Sbjct 954 CATAAGAAGCCTTGA 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49430400648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5