BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475924
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67990.1 | Symbols: ATTSM1, TSM1 | S-adenosyl-L-methionine-d... 1286 0.0
AT1G67980.1 | Symbols: CCOAMT | caffeoyl-CoA 3-O-methyltransfer... 616 1e-175
> AT1G67990.1 | Symbols: ATTSM1, TSM1 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr1:25489455-25490867
FORWARD LENGTH=859
Length=859
Score = 1286 bits (696), Expect = 0.0
Identities = 804/855 (94%), Gaps = 12/855 (1%)
Strand=Plus/Plus
Query 1 AACACTCAAAAGAGA-TC-CTC-A-CGAGCAAGAGAGAGATGGATGGTCGATTACCTGAC 56
||||||||||||||| || | | | |||||||||||||||||||||||||||||||||||
Sbjct 1 AACACTCAAAAGAGATTCTCACGATCGAGCAAGAGAGAGATGGATGGTCGATTACCTGAC 60
Query 57 AAAGGGATTCTCAAGAGCGAGGCTCTTAAACAGTACATTATGGAAACGACAGCGTATCCA 116
||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 61 AAAGGCATTCTCAAGAGCGAGGCTCTAAAACAGTACATCATGGAAACAACAGCGTATCCA 120
Query 117 AGAGAGCACGCATTGCTTAAAGAACTTCGAGAAGCTACAATCCAAAGATATGGCAATTTA 176
||||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 121 AGAGAACACGAATTGCTTAAAGAACTTCGAGAAGCTACAATCCAGAGATATGGAAATTTA 180
Query 177 AGCGAGAT-GGAGGTTCCGGTTGATGAAAGTCTATTTCTATCGATGCTTGTAAAGATAAT 235
|||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 181 AGCGAGATGGGA-GTTCCGGTTGATGAAAGTCTATTTTTATCGATGCTTGTAAAGATCAT 239
Query 236 GAATGCGAAAAACACTATCGAGATCGGTGTGTTCACGGGTTACTCACTTTTCACCGTAGC 295
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 CAACGCGAAAAACACTATCGAGATCGGTGTGTTCACCGGTTACTCACTTTTCACCGTAGC 299
Query 296 TCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGACCAAGCAGGTTACAA 355
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 TCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGATCAAGCAGGTTACAA 359
Query 356 TTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAATTTCATTCAATC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAATTTCATTCAATC 419
Query 416 TGATGCTGTTAGAGGCTTAGACCAATTATTGAACGGGGAGAAACAAGAGTATGATTTTGC 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGATGCTGTTAGAGGCTTAGACCAATTATTGAACGGGGAGAAACAAGAGTATGATTTTGC 479
Query 476 ATTTGTGGATGCTGACAAGACGAACTATGTTTACTTCCTTGAGAAGCTGCTTAAGTTAGT 535
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 480 ATTTGTGGATGCTGACAAGACGAACTACGTTTACTTCCTTGAGAAGCTCCTTAAGTTAGT 539
Query 536 GAAGGTTGGAGGAATCATTGCGTTCGATAACACCTTATGGTTTGGTACTCTAATTCAGAA 595
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 540 GAAGGTTGGAGGAATCATTGCCTTCGACAACACTTTATGGTTTGGTACTCTAATTCAGAA 599
Query 596 GGAAAACGAAGTTCCAAGCCATATGAGAGCTTATAGAGAAGCACTTTTAGAGTTCAACAA 655
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 600 GGAAAACGAAGTTCCAGGCCATATGAGAGCTTATAGAGAGGCACTTTTAGAGTTCAATAA 659
Query 656 GATTTTGGCACGGGATCCTCGAGTCGAAATCGCTCAGATATCCATCGGAGATGGTCTCAC 715
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 GATATTGGCTCGGGATCCTCGAGTCGAAATCGCTCAAATATCCATCGGAGATGGTCTCAC 719
Query 716 ATTATGCAGACGCCTTATATGATTGAAAT-TGTAGTAAATAATGTTATGTGCTACAATAA 774
|||| ||||| |||||||||| ||| | |||||||||||||||| |||| ||||||
Sbjct 720 GCTATGTAGACGTCTTATATGAT--AAACCTATAGTAAATAATGTTATATGCTTCAATAA 777
Query 775 TGAA-TTTGTCCTTTATTTGTAATGTTATAATGCTACAATAATGACCCTTCATCTTCCTA 833
| || |||| ||||| |||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 778 T-AACTTTGGCCTTTGTTTGTAATGTTATA-TGCTACTATAATGACTCTTCATCTTCCTA 835
Query 834 ATAAAACTTCTCTTT 848
|||||||| ||||||
Sbjct 836 ATAAAACTCCTCTTT 850
> AT1G67980.1 | Symbols: CCOAMT | caffeoyl-CoA 3-O-methyltransferase
| chr1:25487714-25489231 FORWARD LENGTH=1006
Length=1006
Score = 616 bits (333), Expect = 1e-175
Identities = 573/689 (83%), Gaps = 15/689 (2%)
Strand=Plus/Plus
Query 56 CAAAGGGATTCTCAAGAGCGAGGCTCTTAAACAGTACATTATGGAAACGACAGCGTATCC 115
||||||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct 31 CAAAGGGATTCTCAAGAGCGAAGCTCTAAAACAGTACATCATGGAAACGTCAGCGTATCC 90
Query 116 AAGAGAGCACGCATTGCTTAAAGAACTTCGAGAAGCTACAATCCAAAGATATGGCAATTT 175
||||||||| | |||||| || ||||||||| ||||||| |||||| ||| || |||||
Sbjct 91 AAGAGAGCATGAATTGCTCAAGGAACTTCGAAAAGCTACTGTCCAAAAATACGGAAATTT 150
Query 176 AAGCGAGATGGAGGTTCCGGTTGATGAAAGTCTATTTC-TATCGATGCTTGTAAAGATAA 234
||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |
Sbjct 151 AAGCGAGATGGAGGTTCCGGTTGATGAGGGTC-ATTTCCTATCGATGCTTGTAAAGATCA 209
Query 235 TGAATGCGAAAAACACTATCGAGATCGGTGTGTTCACGGGTTACTCACTTTTCACCGTAG 294
||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||| ||
Sbjct 210 TGAATGCGAAAAACACTATCGAGATCGGTGTTTTCACCGGTTACTCGCTTCTCACTACAG 269
Query 295 CTCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGACCAAGCAGGTTAC- 353
|||||||||| |||||||||||||||||||| |||||||||||||| ||| || ||||
Sbjct 270 CTCTTGCTTTACCTGAAGATGGCCGTATTACCGCGATAGACATTGATAAAGAAGCTTACG 329
Query 354 AATTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAATTTCATTCAA 413
|| |||| |||||||||||| ||||| || ||||||||||||||||| ||||| || ||
Sbjct 330 AAGTTGG-ACTAGAGTTTATTAAGAAGGCTGGTGTTGATCACAAGATTAATTTTATCCAT 388
Query 414 TCTGATGCTGTTAGAGGC-TTAGACCAATTATTGAACGGGGAGAAACAAGAGTATGATTT 472
|| |||| | ||| |||| ||||||||||| |||||| | ||| |||| ||||||
Sbjct 389 TCCGATGGTCTTA-AGGCCTTAGACCAATTGGTGAACG---ACAAATGTGAGTTTGATTT 444
Query 473 TGCATTTGTGGATGCTGACAAGA-CGAA-CTATGTTTACTTCCTTGAGAAGCTGCTTAAG 530
|||||||| |||||||||||| | | || ||| || |||||| ||||| ||| || ||
Sbjct 445 TGCATTTGCGGATGCTGACAA-ATC-AAGCTACGTCAACTTCCATGAGAGGCTTCTAAAA 502
Query 531 TTAGTGAAGGTTGGAGGAATCATTGCGTTCGATAACACCTTATGGTTTGGTACTCTAATT 590
|| ||||||||||| ||||||||||||||||| |||||||| ||||||||| | |
Sbjct 503 TTGGTGAAGGTTGGGGGAATCATTGCGTTCGACAACACCTTGTGGTTTGGTTTTGTGGCG 562
Query 591 CAGAAGGAAAACGAAGTTCCA-AGCCATATGAGAGCTTATAGAGAAGCACTTTTAGAGTT 649
|| | ||| | | |||||| ||| ||||||||| ||||||| ||| ||| |||| ||
Sbjct 563 GAGGATGAAGATGGAGTTCCGGAGC-ATATGAGAGAATATAGAGCAGCTCTTATAGAATT 621
Query 650 CAACAAGATTTTGGCACGGGATCCTCGAGTCGAAATCGCTCAGATATCCATCGGAGATGG 709
||| |||| ||||| |||||| |||||||| || ||||||| ||||| ||||||||
Sbjct 622 CAATAAGAAATTGGCTTTGGATCCCCGAGTCGAGGTCTCTCAGATTTCCATTGGAGATGG 681
Query 710 TCTCACATTATGCAGACGCCTTATATGAT 738
| |||| | || ||||| ||| | ||||
Sbjct 682 TATCACGCTCTGTAGACGTCTTGTTTGAT 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5