BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475932
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1483 0.0
> AT1G67950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:25478713-25480580 REVERSE LENGTH=1171
Length=1171
Score = 1483 bits (803), Expect = 0.0
Identities = 939/1003 (94%), Gaps = 15/1003 (1%)
Strand=Plus/Plus
Query 21 GGCTGCTTTCATTGATTCGGATCAAACTCA-CAACAACATTCTAATGGATTCACAGTCAA 79
|||||||||||||||||||||||||||||| | |||||||||| |||||||| || ||||
Sbjct 172 GGCTGCTTTCATTGATTCGGATCAAACTCAGC-ACAACATTCTTATGGATTCCCAATCAA 230
Query 80 CTGTCTCCGGTGTGAAAACTGTCAAGATAAGCAATGTTTCACTACTTGTTTCTAAGAAAG 139
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 231 CTGTCTCCGGTGTGAAAACTGTCAAGATTAGCAATGTTTCACTAATTGTTTCTAAGAAAG 290
Query 140 ATGTTAAAGAGTTCTTTTCTTTCTCTGGTGACATTCAGTTCGTCGAGATGCGAAGTGAGA 199
|||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 291 ATGTCAAAGAGTTCTTTTCTTTCTCTGGTGACATTCAATACGTCGAGATGCGAAGTGAGA 350
Query 200 CACAAGAAAGTCAAGCT-GCTTATGTTACTTTTAAGGATCCTCAAGGCGCACAAACTGCA 258
||||||| |||| || | || |||||||||||||||||| | ||||| || ||||||||
Sbjct 351 CACAAGAGAGTC-AGGTCGCATATGTTACTTTTAAGGATTCACAAGGAGCTGAAACTGCA 409
Query 259 ATGCTCTTAACGGGAGCGGTCATTGCAGATCTTCGTGTTAGTATTACTCCTGCTGTTAAC 318
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 410 ATGCTCTTAACGGGAGCTGTCATTGCAGATCTTCGTGTTAGTATAACTCCTGCTGTTAAC 469
Query 319 TA-CGAGCTGCCACCAGAAGCCCTTGCACTTGACT--C-GGAA-AGTTCGTTTAACGGTT 373
|| | |||| ||||||||||||||||||||||||| | |||| | ||||||||| ||||
Sbjct 470 TATC-AGCTACCACCAGAAGCCCTTGCACTTGACTCGCAGGAACA-TTCGTTTAATGGTT 527
Query 374 TCACTGTCAAGAGAGCTGAAGATGTGGTGAATATCATGGTGGGAAGGGGTTATGCTCTTG 433
| ||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 528 TTTCTGTCAAGAAAGCTGAAGATGTGGTGAACATCATGGTGGGAAGAGGTTATGCTCTTG 587
Query 434 GAAAAGACGCTATGGAGAAAGCCAAAGCGTTCGACGACAGACACAACTTGATCTCAAACG 493
|||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 588 GAAAAGACGCCATGGAGAAAGCCAAAGCATTTGATGACAGACACAACTTGATCTCAAACG 647
Query 494 CTTCAGCAACCATTGCCTCGCTTGACGATAAGATGGGTCTGAGCGAAAAGCTAAGCATAG 553
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CTTCTGCAACCATTGCATCGCTTGACGATAAGATGGGTCTGAGCGAAAAGCTAAGCATAG 707
Query 554 GAACTACTGTGGTGAATGAGAAGTTGAGAGATATCGATGAGCGTTATCAGGTGAGGGAGA 613
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 708 GAACAACTGTGGTTAATGAGAAGTTGAGAGATATCGATGAGCGATATCAGGTGAGGGAGA 767
Query 614 TAACGAAATCTGCTTTAGCAGCTGCAGAAGAGACAGCAATCAGTGCCAGAACAGCTTTAA 673
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 768 TAACGAAATCTGCTTTAGCAGCTGCTGAAGAGACAGCAATCAGTGCAAGAACGGCTTTAA 827
Query 674 TGGCAAACCCTTACGTATCAAGTGGAGCTTCGTGGTTTTCAAACGCGTTTGGCGCAGTGT 733
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TGGCAAACCCTTATGTATCAAGTGGAGCTTCGTGGTTTTCAAACGCGTTTGGCGCAGTGA 887
Query 734 CAAAGGCGGTTAAAGAGAAAGTTGAGAATGGGGGAGAGGGAAGAAAGGAGATCATCACAC 793
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 888 CAAAGGCGGTTAAAGAGAAAGTTGAGAATGGAGGAGAAGGAAGAAAGGAGATCATCACAC 947
Query 794 TTGATCCCTCTTCACCTAAAGATCCTGCTGTAGTTCCTGTTAAGCTCGGTTGATGCAGAT 853
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 948 TTGATCCCTCTTCACCCAAAGTTCCTGCTGTAGTTCCTGTTAAGCTCGGTTGATGCAGAT 1007
Query 854 CTCATTAAACCAATCGGATCTCGACTAAATTCTTTGATAGGTTTGTTGTTCATATATATG 913
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CTCATCAAACCAATCGGATCTCGACTAAATTCTTTGATAGGTTTGTTGTTCATATATATG 1067
Query 914 CTTTCGTATGCTAAAGA-AAGATAAAAATACATAAACCATAAAAGGTGTTGTTACATTCA 972
||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1068 CTTTCGTATGCTAAAGAGAAGATAAAAAGACATAAACCATGAAAGGTGTTGTTACATTCA 1127
Query 973 GAC-AGCATTTTGTTCCTCTCTCAAAAGAAATTATTAAGATTC 1014
|| ||||||| |||||||||| ||||| |||||||||||||
Sbjct 1128 -ACCAGCATTT-GTTCCTCTCTTGAAAGAGATTATTAAGATTC 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5