BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475935
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68180.1 | Symbols: | RING/U-box superfamily protein | chr1... 1469 0.0
> AT1G68180.1 | Symbols: | RING/U-box superfamily protein | chr1:25554721-25555661
FORWARD LENGTH=941
Length=941
Score = 1469 bits (795), Expect = 0.0
Identities = 893/941 (95%), Gaps = 4/941 (0%)
Strand=Plus/Plus
Query 1 CTTTGTCTTGCCTCTTCTTAAAAACATGTACACGTGTTTAAGTATAAATGCATATATTTA 60
||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| |
Sbjct 1 CTTTGTCTTGCCTCTTCTTGAAAACATGTACACGTATTTAATTATAAATGCATATATAAA 60
Query 61 GATTCTACCAAC--AAAATTAAAAAGATTGGAAACATGACATCTGCGTATCGTCCAAGAG 118
||| ||||| || |||| ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 61 GATCCTACCGACGAAAAAATAAAAAGATTGAAAACATGACATCTGCTTATCGTCCAAGAG 120
Query 119 TTATTGTGAATGGAACAAGAAGAACAAGAACGTTCCATTACTTCTATTGTCGTCATTGTA 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TTATTGTGAATGGAACAAGAAGAACAAGAACGTTCCATTACTTCTATTGTCGCCATTGTA 180
Query 179 GCCGTACCATTAGGCTAAGAAGCTTTGGTCTATATGGTCCTATATGTCCTTTCTGTTCTA 238
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 GCCGTACCATTAGGCTAAGAAGCTTTGGTCTATATGGTCCCATATGTCCTTTCTGTTCTA 240
Query 239 GAGAGATCAATCTTCACGATGAGCTTGACATTATGAGGCCAAGCCGACCTTATTGGGATA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGAGATCAATCTTCACGATGAGCTTGACATTATGAGGCCAAGCCGACCTTATTGGGATA 300
Query 299 CCGATACCGATTGGATCACTCTCCATCTTATCAACCCTCCAAGAAGTAACCGGTTCAATC 358
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 GTGATACCGATTGGATCACTCTCCATCTTATCAACGAACCAAGAAGTAACCGGTTCAATC 360
Query 359 GTGATGATCTAGTTTATAATACCGACGAGGAATTCGCTGATGTTATGCCTAGTGTACAAA 418
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 361 ATGATGATCTAGTTTATAATACTGACGAGGAATTCGCTGATGTCATGCCTAGTGTACAAA 420
Query 419 TCGGTCCACCACCAGCCTCGCAATCCGCCATCGAGGCTGTAAGGACGGTGACAATCACGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TCGGTCCACCACCAGCCTCGCAATCCGCCATCGAGGCTGTAAGGACGGTGATAATCACGG 480
Query 479 AGGAAGATTTGGCGAAAGAGAAAGTTTGTGCGATATGCAAGGAGGAATTTGAAGTTGGAG 538
| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGAAGATTTGGTGAAAGAGAAGGTTTGTGCGATATGCAAGGAGGAATTTGAAGTTGGAG 540
Query 539 AGGAAGGAAAAGAATTGAAATGCTTGCATTTGTACCATTCAAGCTGCATTGTGTCTTGGT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGAAGGAAAAGAATTGAAATGCTTGCATTTGTACCATTCAAGCTGCATTGTGTCTTGGT 600
Query 599 TGAACATTCACAACACTTGTCCCATTTGTCGCTTTGAGGTTAACTTAGGTGTTCCCGAAA 658
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 601 TGAACATTCACAACACTTGTCCCATTTGTCGTTTTGAGGTTAACTTAGGTGTTTCCGAGA 660
Query 659 GTAACGTAGATGAAGGAGGGTCTCACCACGTCGACAATGATCGAACAAATCGGTTTCGGA 718
|||||||||| |||||||||||| || || |||||||||||||| |||||||||||||||
Sbjct 661 GTAACGTAGACGAAGGAGGGTCTTACAACATCGACAATGATCGATCAAATCGGTTTCGGA 720
Query 719 CTCGAGTTTGTTCTTTGTGGCCTCTCCGAATGATGATTGATTGGGTACATAATCTCATAG 778
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTCGGGTTTGTTCTTTGTGGCCTCTCCGAATGATGATTGATTGGGTACATAATCTCATAG 780
Query 779 GTAAGATTCCACCTCTCGATATAACTTTCATGGCTTTCCTATTATGCTTTTACGTTTTTT 838
||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||| ||||
Sbjct 781 GTAAGATTCCACCTCCCGATATAGCTTTCATGGCTTTTCTATTATGCTTATACGGGTTTT 840
Query 839 AACTATGATATTTAACTCTTAAGAATATATATAATTTCGCAGATATATGAATAACAAACT 898
||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 841 GACTATGATATTTAACTCTTAAAAATATATACAATTTCGCAGATATAAGAATAACAAACT 900
Query 899 CTTGACAATAAAA--TTAAAGAATTGCAAACAAGAATGTAT 937
|||||||| |||| ||||||||||||||||||||||||||
Sbjct 901 CTTGACAAAAAAAAATTAAAGAATTGCAAACAAGAATGTAT 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45813542064
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5