BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475936
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68185.1 | Symbols: | Ubiquitin-like superfamily protein | ... 1136 0.0
> AT1G68185.1 | Symbols: | Ubiquitin-like superfamily protein
| chr1:25556426-25558522 FORWARD LENGTH=1027
Length=1027
Score = 1136 bits (615), Expect = 0.0
Identities = 728/782 (93%), Gaps = 9/782 (1%)
Strand=Plus/Plus
Query 1 AAAATCACAGCAAAATAAAATACAAATTCAAAATCCATATCCAATTCTCATCTAGGGTTT 60
|||||||||||||||||| || |||||||||||| | | ||||| | |||||||||| ||
Sbjct 22 AAAATCACAGCAAAATAATATTCAAATTCAAAAT-C-TGTCCAAAT-TCATCTAGGG-TT 77
Query 61 TCTGATTAAACAGGCGAAGAAGATCCAAATTTTGCT-ACAATGGGAGGTGAAGGAGAAGA 119
|||||| |||||| ||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 78 TCTGATAAAACAGACGAAGAAGATCCAAA-TTCGCTAACAATGGGAGGTGAAGGAGAAGA 136
Query 120 TCTAGAGCCACTTTTTGATTATCGTCGTGTTCAACCAGCGAATTTCGTTTGTATtgatga 179
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 137 TCTAGAGCCACTTTTTGATTATCGTCGTGTTCAGCCAGCGAATTTCGTTTGTATCGAT-- 194
Query 180 cgatgatgatgatgatTCCTCGAAGACGCCGGTTCCGAAGAAAGCGAAAACTTCACAAAC 239
||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 195 -GATGATGATGATGATGCCTCGGTGACGCCAATTCCGAAGAAAGCGAAAACTTCACAAAC 253
Query 240 AGTTGAGAAGTTAGATGATGATGTGAAAGTGATTGAAGTGGCGGGTGATGACGATTGGTT 299
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 254 AGTTGAGAAGTTAGATGATGATGTGAAAGTGATTGAAGTTACGGGTGATGACGATTGGTT 313
Query 300 GCTTCCTCCGCCAAAGGTTATCTTCGACAAAAATAAAGAGTCTGTTGAAGATTCAACTAT 359
||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 314 GCTTCCTCCACCAAAGGTTATCTTCGACAAAAGTAAAGACTCTGTTGAAGATTCAACTAT 373
Query 360 TAAAGCATTGAGGTCGAAGAAGATGGAGCTTATGTCATTTACAAAAACTGTAGCAGATGT 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 374 TAAAGCATTGAGGTCGAAGAAGATGGAGCTCATGTCATTTACAAAAACTGTAGGAGATGT 433
Query 420 GATGCAGGAAGTGGAGGAGTCTGCTAAAAGGGAAGTTGAAGAATCTCGCAATCCACCTTC 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 434 GATGCAGGAAGTTGAGGAGTCTGCTAAAAGGGAAGTTGAAGAATCTCGCAATCCATCTTC 493
Query 480 AGAGGTTGCTGCTCAGTTACCACCAGAGCCTACGAATGACAGGGCCAAGATTGTCATTAC 539
|||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 494 AGAGACTGCTGCTCAGTTACCATCAGAGCCTACGAATGACAGGGCCAAGATTGTTATTAC 553
Query 540 AATACAGGACAAAGATGGACAGAAGACATTCCGGGTTTTTGCGGATGAGAAGTTTGAGAG 599
|||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||
Sbjct 554 AATACAGGACAAAGATGGACAGAAGACACTCCGGGTGTTTGCGGACGAGAAATTTGAGAG 613
Query 600 GGTTATCAAACTGTATACGGATAAAGTTAAGCTTGACCCGCAAAATCTTGTATTTATATT 659
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 614 GGTTATCAAACTGTATACAGATAAAGCTAAGCTTGACCCGCAAAATCTTGTATTTATTTT 673
Query 660 TGACGGTGATAAGATTGATCCGTCGACCACCCCTTCTCAACTTGACATGGAGGATCATGA 719
||||||||||||||||||||| || ||||| |||||| |||||| |||||||||||||||
Sbjct 674 TGACGGTGATAAGATTGATCCATCAACCACTCCTTCTGAACTTGGCATGGAGGATCATGA 733
Query 720 TATGATTGAAGTACACACCAAACAAAGATGACAAACAGGCGCTTATCGGAATCTGGAATG 779
|||||||||||| ||||||||| ||| ||||||| ||||||| ||||||||||||||||
Sbjct 734 TATGATTGAAGTGCACACCAAAAAAACTTGACAAATAGGCGCTAATCGGAATCTGGAATG 793
Query 780 TC 781
||
Sbjct 794 TC 795
Score = 128 bits (69), Expect = 9e-29
Identities = 95/106 (90%), Gaps = 7/106 (7%)
Strand=Plus/Plus
Query 782 TTTTGTACATCAACAAGGGCAT--GAAAGGA-ATCTCTGCTAACA-CTGGTG-TTGTATC 836
||||||||||||||| |||||| ||| ||| |||||||||||| |||||| |||||||
Sbjct 828 TTTTGTACATCAACATGGGCATGGGAAGGGATCTCTCTGCTAACATCTGGTGTTTGTATC 887
Query 837 TGTGACCTTTCTCATTTTATCGGAATTTT-TT-CTTTCGTTCTTTC 880
||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 888 TGTGACCTTTCTCATTTTATCGGAATTTTGTTTCTTTCTTTCTTTC 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45260966447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5