BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475937
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68190.1 | Symbols: | B-box zinc finger family protein | ch... 1829 0.0
> AT1G68190.1 | Symbols: | B-box zinc finger family protein |
chr1:25559246-25561212 FORWARD LENGTH=1340
Length=1340
Score = 1829 bits (990), Expect = 0.0
Identities = 1136/1207 (94%), Gaps = 7/1207 (1%)
Strand=Plus/Plus
Query 1 AAGCTTTTGTCACCAATCTCTGAtttttttAGTTCTCTCATCGGGACGAATCTTTTATAT 60
|||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 4 AAGCTTTTGTCACCAATCTCTGATCTTTTTAGTTCTCTTATCGGGAGGAATCTTTTATAT 63
Query 61 GTTATG---GATAATAATTGAGAAAATGGAAAGAGTATGTGAGTTTTGTAAAGCGTTTAG 117
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 64 GTTATGTATAATAATAATTGAGAATATGGAAAGAGTATGTGAGTTTTGTAAAGCGTATAG 123
Query 118 AGCAGTGGTTTATTGTATAGCTGATACAGCAAATCTTTGTTTAACATGTGATGCTAAGGT 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 124 AGCAGTGGTTTATTGTATAGCTGATACAGCAAATCTTTGTTTAACATGTGATGCAAAGGT 183
Query 178 TCATTCAGCTAATTCGCTTTCGGGACGACATTTACGTACTGTTTTATGTGATTCTTGTAA 237
||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 184 TCATTCAGCTAATTCACTCTCGGGACGGCATTTACGTACGGTTTTATGTGATTCTTGTAA 243
Query 238 GAATCAGCCTTGTGTTGTTCGATGTTTTGACCATAAAATGTTTCTTTGCCATGGATGTAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GAATCAGCCTTGTGTTGTTCGATGTTTTGACCATAAAATGTTTCTTTGCCATGGATGTAA 303
Query 298 CGATAAGTTTCATGGTGGTGGTTCTTCTGAGCATCGTAGAAGGGATTTGAGGTGTTATAC 357
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 304 TGATAAGTTTCATGGTGGTGGCTCTTCTGAGCATCGTAGAAGGGATTTGAGGTGTTATAC 363
Query 358 GGGTTGTCCTGCTGCTAAAGATTTCGCGGTTATGTGGGGTTTTCAAGTTATGGATGATGA 417
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 364 GGGTTGTCCTCCTGCTAAAGATTTCGCGGTTATGTGGGGTTTTCGAGTTATGGATGACGA 423
Query 418 TGATGATGTTTCGTTAGAGCAATGTTTTCGAATGGTTAAACCGAAGGTGCAAAGAGAAGG 477
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 424 TGATGATGTTTCGTTAGAGCAATCTTTTCGAATGGTTAAACCTAAGGTGCAAAGAGAAGG 483
Query 478 TGGTTTTATCTTGGAACAGATTCTTGAATTGGAGAAGGTTCAGCTGAGAGAAGAGAATGG 537
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 484 TGGTTTTATCTTGGAACAGATTCTTGAATTGGAGAAGGTTCAGCTCAGGGAAGAGAATGG 543
Query 538 TAGTTCTTC-TGTGACAGAACAAGCTGATCCATCTCCATTGGAGCTTCCGAAGAAATCTG 596
||||||||| | ||||||||| || |||||||||||||||||||||||| |||||| | |
Sbjct 544 TAGTTCTTCCT-TGACAGAACGAGGTGATCCATCTCCATTGGAGCTTCCTAAGAAACCCG 602
Query 597 AAGAACGGTTAATTGATCTTCCGCAGACCGGAAAAGAGCTGATTGTTGATTTTTCCCACT 656
|||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 603 AAGAACAGTTAATCGATCTTCCGCAGACCGGAAAAGAGCTGGTTGTTGATTTTTCACACT 662
Query 657 TGTCCTCATCTTCCACACTTGGTGATTCCTTTTGGGAATGCAAAAGCCCATATAATAAGA 716
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 663 TGTCCTCATCTTCCACACTTGGTGATTCCTTTTGGGAATGCAAAAGTCCATACAATAAGA 722
Query 717 ACAATCAGTTGTGGCATCAAAATATACAAGACATTGGAGTTTGTGAAGATACAATCTGCA 776
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 723 ACAATCAGTTGTGGCATCAAAATATACAAGACATTGGAGTATGTGAAGATACAATCTGCA 782
Query 777 GTGATGACGACTTCCAAATACCGGACATCGATCTCACTTTCCGAAACTTTGAAGAGGAAT 836
|||| || |||||||||||||| ||||| |||||||||||||| |||||||||||| |||
Sbjct 783 GTGACGATGACTTCCAAATACCTGACATTGATCTCACTTTCCGGAACTTTGAAGAGCAAT 842
Query 837 TTGGAGCTGATCCAGAGCCAACTGCAGACAATAAGAACGTCTTCTTTGTTTCTTCCCTAG 896
||||||||||||| ||||||| |||||| | ||| ||||| ||||||||||||||||| |
Sbjct 843 TTGGAGCTGATCCTGAGCCAATTGCAGATAGTAACAACGTGTTCTTTGTTTCTTCCCTTG 902
Query 897 ACAAATCACATGAGATGAAGACATTTTCTTCTTCATTCAATAACCCCATATTTGCACCTA 956
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 903 ACAAATCACATGAGATGAAGACATTTTCTTCTTCATTCAATAATCCCATATTTGCACCTA 962
Query 957 AACCCGCTTCATCATCCATTTCATTCTCAAGCAGCGAAACCGATAACCCTTACAATCACA 1016
|||| ||||||||| | || |||||||||||||| ||||||||||||||||| | ||||
Sbjct 963 AACCAGCTTCATCAACTATCTCATTCTCAAGCAGTGAAACCGATAACCCTTATAGTCACT 1022
Query 1017 CAGAGGAAGTAATCTCATTTTGTTCC-CCTCTCTCTAACAATGCACGTCAAAAGGCCATC 1075
||||||||||||||||||||||| || || |||||||||||| |||||||||||| ||||
Sbjct 1023 CAGAGGAAGTAATCTCATTTTGTCCCTCC-CTCTCTAACAATACACGTCAAAAGGTCATC 1081
Query 1076 TCAAGGCTCAAGGAAAAGAAGAGAGCACGAGTGGAGGAGAAACAAGCTTAATATGGTCCC 1135
||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1082 ACAAGGCTCAAGGAGAAGAAGAGAGCAAGAGTGGAGGAGAAAAAAGCTTAATATGGTCCC 1141
Query 1136 AAGAAAATGGCAGAGTAACAAAATTTCTTGCATTGCCTTTGTACATAAGACACTAATCTA 1195
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1142 AAGAAAATGGCAGAGTAACACAATTTCTTGCAATGCCTTTGTACATAAGACACTAATCTA 1201
Query 1196 CCACTTC 1202
|| ||||
Sbjct 1202 CCTCTTC 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63403288335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5