BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475938
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68200.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 1517 0.0
> AT1G68200.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:25562118-25563948 FORWARD LENGTH=927
Length=927
Score = 1517 bits (821), Expect = 0.0
Identities = 896/932 (96%), Gaps = 6/932 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAACAAAATCGCGCCGTTTAGTTACAGCGGAAGCTCCGCCGGAGATTCTTCTTGT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 1 ATGGAAAACAAAATCGCGCCGTTTAGTTACAGCGGAAGCTCCGCCGGAAATTCATCCAGT 60
Query 61 AGCGGCGTCGTTTCGTCGTCTCTTTTCTCTGATCAACTCTACAAGTCGACTCGCAACATC 120
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 61 GGCGGCGTCGTTTCGTCGTCTCTCTACTCTGATCAACTCTACAAGTCGACTCGCAACATA 120
Query 121 ATGCAACAGCGTCAAGATATGGTGAATCGCGAGGCGTTGTGTTACACGCGTCTTCATGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ATGCAACAGCGTCAAGATATGGTGAATCGCGAGGCGTTGTGTTACACGCGTCTCCATGAG 180
Query 181 GCTTCGCTTGAAGCAGAAGCGCTTCGTCTAGAGAACACTGAACTCCGATCGATGAATCGT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 GCTTCGCTTGAAGCAGAAGCGCTTCGTCTAGAGAACACTGAACTCCGATCGATGAATCTT 240
Query 241 CATCTCAAGACTGAGCTCAACAGTCTCATCAGATCTTCGATCCAGAACCGATTTGATCTT 300
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 CGTCTCAAGAATGAGCTCAACAGTCTCATCAGATCTTCGATCCAGAACCGATTTGATCAT 300
Query 301 CGATCTCCGCTTCGGATGCTTAGCAATCTTTCGATCGGAGGTAATGACGCCGACGAAGTG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGATCTCCGCTTCGGATGCTTAGCAATCTTTCGATCGGAGGTAATGACGCCGACGAAGT- 359
Query 361 GAGAATCAGAATCAGAACCGTACGGTTAATCGTGATGATGTCAGTGATGAGAGTCCGACG 420
| | ||||||||||||||||||||||||| ||||| |||| |||| |||||||||||
Sbjct 360 G-G----AGAATCAGAACCGTACGGTTAATCGCGATGACGTCAATGATAAGAGTCCGACG 414
Query 421 AGTGTTATGGAGAATGAGGATCTCAATCGTTCTTCGCTTCCGAAGAGCATCTCTGTGAGA 480
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 415 AGTGTTATGGAGAATGAGGATCTGAATCGCTCTTCGCTTCCAAAGAGCATCTCTGTGAGA 474
Query 481 TCTAGTGGTTACTCTAAGGCGAGTCAGGGAGGTGGTGGTGCGGCTGCTCAAAGTGGAAAA 540
|||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 475 TCTAATGGCTACTCTAAGGCAAGTCAGGGAGGTGGTGGTGCGGCTGCTCAAAGTGGAAAA 534
Query 541 CCTCGTGGAACCGTAACTAAGCCTGGGACTTGTGGTCAAGTCAGTACGACGCAGAAGGTG 600
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 CCTCGTGGAACCGTCACTAAGCCTGGGACTTGTGGTCAAGTCAGTACTACGCAGAAGGTG 594
Query 601 TATGTGCGAGGAGGAGGGAAGAAAGAAGATCAGGAGGAGGAGATAGAAGTGGAGGTGTAC 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 595 TATGTGCGAGGAGGAGGGAAGAAAGAAGATCAGGAGGAAGAGATAGAAGTGGAGGTGTAC 654
Query 661 AATCAAGGGATGACAAAGACAGAGCTGTGCAACAAATGGCAAGAGACAGGGACATGCCCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AATCAAGGGATGACAAAGACAGAGCTGTGCAACAAATGGCAAGAGACAGGGACATGCCCA 714
Query 721 TATGGTGACCATTGCCAGTTCGCTCACGGCATTAAGGAACTCCGCCCAGTGATCCGCCAT 780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 715 TATGGTGACCATTGCCAGTTCGCTCACGGCATTAAGGAACTCCGTCCAGTGATCCGCCAT 774
Query 781 CCGCGTTACAAGACTGAGGTTTGCAGAATGGTTCTTGCTGGTGATAACTGTCCTTATGGT 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CCCCGTTACAAGACTGAGGTTTGCAGAATGGTTCTTGCTGGTGATAACTGTCCTTATGGT 834
Query 841 CACCGTTGCCACTTCCGCCACTCACTATCTGAGCAGGAGAAGCTCGTTGCTGCTGGTTTC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CACCGTTGCCACTTCCGCCACTCACTATCTGAGCAGGAGAAGCTCGTTGCTGCTGGTTTC 894
Query 901 AAACCCAAGTCATCCCTCAAGCTGCTTACATG 932
|||||||||||||||||||||||| | |||||
Sbjct 895 AAACCCAAGTCATCCCTCAAGCTGATCACATG 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45562371329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5