BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475940
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68220.1 | Symbols: | Protein of unknown function (DUF1218)... 1199 0.0
> AT1G68220.1 | Symbols: | Protein of unknown function (DUF1218)
| chr1:25570231-25571712 FORWARD LENGTH=847
Length=847
Score = 1199 bits (649), Expect = 0.0
Identities = 797/862 (92%), Gaps = 36/862 (4%)
Strand=Plus/Plus
Query 1 AGGACACTTTAACGTTTCTTCACTTGACcaaagctctctaaagat-aaagacaaaagagt 59
|||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct 1 AGGACACTTTAACGTTTCTTCACTTGCCCAAAGCTCTCTGAAGATAAAAGACAAAAGAGT 60
Query 60 aaagagag-aagaagcaaagaaaaccaaaTCAATGGCGGTTTCCGTTTCAATCCTCACCG 118
|||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 AAAGAGAGAAAGAAGC-ACGAAAACCAAATCAATGGCGGTTTCAGTTTCAATCCTCACCG 119
Query 119 TCGTCACTGCTCTTCACCTCCTTGCTTTCGTCTTCGCCTTCGGTGCCGAGCGTCGCCGTA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCGTCACTGCTCTTCACCTCCTTGCTTTCGTCTTCGCCTTCGGTGCCGAGCGTCGCCGTA 179
Query 179 GCACCGCTGTGCCGGTGCCGGACCAGTACGATGAGAAGACCT-TTTGTAAGTACGGAACT 237
|||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 180 GCACCGCTGTGCCGGTTCCGGATCAGTACGATGAGAAGAC-TATTTGTAAGTACGGAACT 238
Query 238 GAGGCATCGACGGTATACGGTATGTCGGCGTTTGGGTTACTTCTTGTTAGCCAGGCGTTG 297
||||| ||||| || ||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 239 GAGGCGTCGACAGTGTACGGTATGTCGGCGTTTGGGTTGCTTCTTGTTAGCCAAGCGGTG 298
Query 298 GTTAACGGTGTTACAAAGTGTCTCTGCTTTGGAAAGGGTCTTGTTACTGGTACTTCTTAC 357
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 299 GTTAACGGTGTTACTAAGTGTCTCTGTTTTGGAAAGGGTCTTGTTACTGGTACTTCTTAC 358
Query 358 ACTGTGTGGGCTATTGTCTTCTTCGTTGTTTCTTGGGTAAGCTTTTTAGGAGCTGAGGCG 417
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACTGTCTGGGCTATTGTCTTCTTCGTTGTTTCTTGGGTAAGCTTTTTAGGAGCTGAGGCG 418
Query 418 TGTTTGTTGGCTGGATCAGCGAGGAATGCGTACCACACTAAAAGTGAAGGCATTTACAAA 477
|| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 TGCTTGTTGGGTGGATCAGCGAGGAACGCGTACCACACTAAAAGTGAAGGCATTTACAAA 478
Query 478 GGGAAAGAGATTTCGTGTGCCGTCTTACCTGTTGGGGTCTTTGCTGCTGGAGCTGCTTTC 537
||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 479 GGGAAAGAGCTTTCGTGTGCCGTCTTACCCGTTGGAGTCTTTGCTGCTGGAGCTGCTTTC 538
Query 538 ACTCTAATGTCTTTGATTGCAACCATTCTTTACTACTTGGCTCATTCTAAGGCTGACACT 597
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 539 ACTCTCATGTCTTTGATTGCAACCATTCTTTACTACTTGGCTCATTCTAAGGCTGATACT 598
Query 598 GGTGGATGGGAGAAGCATCAGAACGATGGCATTAACATTGGTATGACCACTCCTTCAGAA 657
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGCGGATGGGAGAAGCATCAGAACGATGGCATTAACATTGGTATGACCACTCCTTCAGAT 658
Query 658 GCTCCAAAGCAACAAAACACCGAGTTCAACAAGGTCTAAACCAATTTCTGTTTGGTCTTA 717
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 659 GCTCCAAAGCAACAAAACACCGAGTTTAACAAGGTCTAAACCAGTTTCTGTTTGGTCTTA 718
Query 718 TGTTGG-TACGCTTTTAAAAACAGGGTAAA---------------GTTGTTTGTTAATTG 761
|||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 719 TGTTGGCTATGCTTTTAAAAACAGGGTAAAACTATAAAAAAAATAGTTGTTTGTTAATTG 778
Query 762 TTCA-TATAAACTTGTGTTC-TCAGATGTAAGATGTGTTGTTGGCTTATGTATGTCTATC 819
| || ||||||||||||| | |||||| ||| ||| | | | |||||||||||||||
Sbjct 779 T-CAATATAAACTTGTGT-CGTCAGATATAA--TGT-T-G--G-CTTATGTATGTCTAT- 828
Query 820 TATGAGAAATTTGGTTTGGCTC 841
|||||||||||||||||||
Sbjct 829 ---GAGAAATTTGGTTTGGCTC 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40991063952
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5