BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475942

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68238.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   479    9e-135


> AT1G68238.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 30201 Blast hits to 
17322 proteins in 780 species: Archae - 12; Bacteria - 1396; 
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; 
Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:25574461-25574835 
FORWARD LENGTH=375
Length=375

 Score =  479 bits (259),  Expect = 9e-135
 Identities = 344/383 (90%), Gaps = 13/383 (3%)
 Strand=Plus/Plus

Query  1    GATGCACAAAAACTCTTTCGATGGTGAGAGGAGAACTCGCGGTGGTACGGGCGGCGGGTA  60
            ||||||||||||||||||| |||||||||||||||||||||||  ||   ||||||||||
Sbjct  1    GATGCACAAAAACTCTTTCAATGGTGAGAGGAGAACTCGCGGTAATA---GCGGCGGGTA  57

Query  61   ATGGTGAAGTCTTGCTCTACATTTGGGCAGCTGTTGTGGCTCTCTCCATCATAGCAACCT  120
            ||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||| || 
Sbjct  58   ATGGTGAAGTCTCACTCTACATTTGGGCAGCTGTTGTGGCTTTCTCCGTCATAGCAGCCG  117

Query  121  TGATTTTCTCATGTAGCGACGGAGCTTCTAAACCTCACACTAACGACGATGTCAATGGCT  180
            ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  118  TGATTTTCTCATGCAGTGACCGAGCTTCTAAACCTCACACTAACGACGATGTCAATGGAT  177

Query  181  CC-GCTTGCGCCGCTGGCTGCGGTGGTGGTTGTGGAGGTCAAAGGGGAAGCACTTTTTGT  239
            || | |||||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct  178  CCAG-TTGCGCCGCTGGCTGCGGTGGTGGTTGTGGAGGTTAAACGGGAAGCATTTTTTGT  236

Query  240  TCACTTTAGTAACATTTGAAGATAAACCATATATATTGGCTTCTTGCTTTAATAAAAA--  297
            | ||||||||||||||| |||||||| | ||| | |||||||||||||||||||||||  
Sbjct  237  TTACTTTAGTAACATTTAAAGATAAAAC-TAT-T-TTGGCTTCTTGCTTTAATAAAAAAA  293

Query  298  GTTAAAGTGTAGTGTAGATAATGTGTAACCAATGAACGTATTATGCTTCTTGAATTTAAC  357
            |||||||||| ||  ||||||| |||| |||||||| ||||| |||||||||||||||||
Sbjct  294  GTTAAAGTGT-GT--AGATAATTTGTAGCCAATGAATGTATTCTGCTTCTTGAATTTAAC  350

Query  358  ATGTTAGTGATCTAATTAGTTTT  380
            || ||||||||||| || |||||
Sbjct  351  ATTTTAGTGATCTAGTTCGTTTT  373



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17895318644


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5