BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475944
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68240.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 961 0.0
> AT1G68240.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25574864-25576129 REVERSE
LENGTH=936
Length=936
Score = 961 bits (520), Expect = 0.0
Identities = 630/681 (93%), Gaps = 16/681 (2%)
Strand=Plus/Plus
Query 150 TGTTACCAAAAACAGTGATCATGAGAAACACGGCGAGGAGCAAGACGAGGAAAGTTACCG 209
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 186 TGTTACCAAAAACAATGATCATGAGAAACACGACGAGGAGCCAGACGAGGAAAGTTACCG 245
Query 210 TATGGCTAAACGGCAACGTTCCATGGAATATCGTATGATGATGGAGAAGAAAAGACGAAA 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TATGGCTAAACGGCAACGTTCCATGGAATATCGTATGATGATGGAGAAGAAAAGACGAAA 305
Query 270 GGAGATTAACA-ATAAAGTAGATATTTTGCAGGGGATGATGCCTAATCGTTCCCCAAAGC 328
|||||| || | ||||||||||||||||||||||| |||||||||||| || | ||||||
Sbjct 306 GGAGATCAA-AGATAAAGTAGATATTTTGCAGGGGTTGATGCCTAATCATTGCACAAAGC 364
Query 329 CCGACCTTGCATCGAAGCTTGAACACATCATTGAATACATTAAAAGTTTAAAATATCAAG 388
| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 365 CGGACCTTGCATCGAAGCTTGAAAACATCATTGAATACATTAAAAGTTTGAAATATCAAG 424
Query 389 TAGATGTTATGT-ATATGGCATACACAGCAACTCCGGTTTACACATCACCATTTTATGCA 447
|||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 425 TAGATGTTATGTCA-ATGGCATACACAACAACTCCGGTTTACACACCACCATTTTATGCA 483
Query 448 GCAGCTCAAGCACCATGTATGTCGCCTTGGGGCTATTATACGCCAGGAGTTCCAATGATG 507
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 484 GCAGCTCAAGCACCATGTATGTCTCCTTGGGGCTATTATACGCCAGGAGTTCCAATGATG 543
Query 508 CCTCAGCAAAACATGACCTATATCCCGCAATATCATCAGGTATATGAGA-CAGCGCCGCC 566
|||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||||||
Sbjct 544 CCTCAGCAAAACATGACCTATATCCCGCAATATCCTCAGGTATATG-GAACAGTGCCGCC 602
Query 567 AAATCAAACTCATCCTTAAAACAAGCTTTAGCTATGTGGCTCTTTAAGACCATCCTGCTT 626
|||||||||||| |||||||||||||| ||||||||||||| ||||||||| ||| ||||
Sbjct 603 AAATCAAACTCAACCTTAAAACAAGCTCTAGCTATGTGGCTTTTTAAGACCCTCCGGCTT 662
Query 627 TAGACTCGTTTCTGTTTATATAGAATGTATTTGTAAACTAAGATATGTACATAGATACAT 686
|||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 663 TAGACTCGTTGCTGTTTATATAGACTGTCTTTGTAAACTAAGATATGTACATAGATACAT 722
Query 687 AAAGGACA-A-GTTACTTTCATGTGTAAAGTTTAGTTTGATGCCACAATATGTAAAAATA 744
||| ||| | || | ||| |||| ||| |||||||||||||||||||||||||||| |
Sbjct 723 AAAT-ACATACGT-AGTTTTATGTATAACTTTTAGTTTGATGCCACAATATGTAAAAACA 780
Query 745 CTTGTTTTCTATGTTCTGTTT-G-TTGAGCGTTGGTCCTCTGTTAT----GTTCTGTTTT 798
| |||||| |||||||||||| | |||||| ||| ||||||||||| ||||||||||
Sbjct 781 CCTGTTTTTTATGTTCTGTTTTGGTTGAGCATTGTTCCTCTGTTATTTATGTTCTGTTTT 840
Query 799 GCTCAACCTTTTTCTTTGTTG 819
|||||||||||||||||||||
Sbjct 841 GCTCAACCTTTTTCTTTGTTG 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5