BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475945
Length=225
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68250.1 | Symbols: | unknown protein; Has 5 Blast hits to ... 298 1e-80
> AT1G68250.1 | Symbols: | unknown protein; Has 5 Blast hits to
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:25579373-25580194 REVERSE LENGTH=822
Length=822
Score = 298 bits (161), Expect = 1e-80
Identities = 201/221 (91%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 1 ATGGACACCGATCGAGATACCGTAGAGTTTTGGTCCTCATTTTTCCAATCCTTTGCTGAC 60
||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 363 ATGGACAACGATCGAGATACCGTAGAGTTCTGGTCCTCACTTTTCCAATCCTTTGCTGAC 422
Query 61 TCAGAACCTAAAGATGGTCTATATCCGGTGGTAAGAAGCCCGATAATGACCATGTCTACA 120
||||||||||||||| || |||||| ||||| |||||||||||||||||||||||||||
Sbjct 423 TCAGAACCTAAAGATAATCCATATCCTGTGGTTAGAAGCCCGATAATGACCATGTCTACA 482
Query 121 CTGATGACCATTGATGAACCGGCTGAGCCGTGGAAGGTTCTTGAATATGGAGGCCAGGAG 180
| |||| |||||||||| |||| |||||| ||||| ||||||||||||||||| |||||
Sbjct 483 CCGATGGCCATTGATGAGCCGGTTGAGCCATGGAAAGTTCTTGAATATGGAGGTAAGGAG 542
Query 181 GTTCGACCGATGGCAATTGATGTGCCAGCTGAGCCATGGAA 221
||||| |||||||| ||||||| ||| ||||||||||||||
Sbjct 543 GTTCGTCCGATGGCCATTGATGAGCCGGCTGAGCCATGGAA 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10103817549
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5