BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475946
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68260.1 | Symbols: | Thioesterase superfamily protein | ch... 811 0.0
AT1G68280.1 | Symbols: | Thioesterase superfamily protein | ch... 737 0.0
AT1G35250.1 | Symbols: | Thioesterase superfamily protein | ch... 496 1e-139
> AT1G68260.1 | Symbols: | Thioesterase superfamily protein |
chr1:25585776-25587658 REVERSE LENGTH=830
Length=830
Score = 811 bits (439), Expect = 0.0
Identities = 522/561 (93%), Gaps = 9/561 (2%)
Strand=Plus/Plus
Query 19 ACCGGAACGGCGGCTCCGGCAATG--T-CTATGGTGTTTC-CGAATTCATCAAGACGACC 74
||||| |||||| ||||||| ||| | | | ||||||| | ||||||| ||||||||
Sbjct 73 ACCGGCACGGCGACTCCGGCTATGCCTGCGGTAGTGTTTCTC-AATTCATGGAGACGACC 131
Query 75 GGTTATG-CTTCCTCTCCGGAGCGCAAAGACCTTCAAGCCTCTCGCATTTC-TCGATCTT 132
||| | ||||||||||||||| ||| |||||||||||||| ||| ||| |||||||
Sbjct 132 ACTTA-GTATTCCTCTCCGGAGCGTAAAAACCTTCAAGCCTCTAGCA-TTCTTCGATCTC 189
Query 133 AAAGGAGGCAAAGGGATGAGTGAGTTCCATGAGGTTGAGCTCAAAGTTCGTGATTATGAA 192
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 190 AAAGGAGGCAAAGGAATGAGTGAGTTCCATGAGGTTGAACTCAAAGTTCGTGATTATGAA 249
Query 193 TTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAACACGGTCGA 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAACACGGTCGA 309
Query 253 CATGAGTTTCTAGAGAGTATCGGTATCAACTGTGACGAAGTAGCACGTTCTGGGGAAGCC 312
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 310 CATGAGTTTCTAGAGAGTATCGGTATCAACTGCGACGAAGTAGCACGTTCTGGGGAAGCC 369
Query 313 TTAGCAATTTCAGAGTTGACAATGAAGTTCCTTGGACCTTTACGTAGCGGAGACAAATTT 372
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 370 TTAGCAATTTCAGAGTTGACAATGAAGTTCCTTTCACCTTTACGTAGCGGAGACAAATTC 429
Query 373 GTGGTGAAAGCAAGGATATCGGGGACATCTGCTGCGCGTATTTACTTTGATCATTTCATC 432
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 430 GTGGTGAAAGCGAGGATATCGGGGACATCTGCTGCGCGTATTTACTTCGATCATTTCATC 489
Query 433 TTTAAACTTCCTAATCAAGAGCCTATATTGGAGGCTAAAGGAATAGCTGTGTGGCTTGAC 492
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 490 TTTAAACTTCCAAATCAAGAGCCTATATTGGAGGCAAAAGGAATAGCTGTGTGGCTCGAC 549
Query 493 AACAAGTACCGTCCTGTTCGTATCCCATCTTCAATACGCTCTAAATTTGTTCACTTCCTA 552
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 550 AACAAGTACCGTCCTGTTCGCATCCCATCTTCTATACGTTCTAAATTTGTTCACTTCCTA 609
Query 553 CGCCAAGACGACACCGTTTGA 573
|||||||||||| ||||||||
Sbjct 610 CGCCAAGACGACGCCGTTTGA 630
> AT1G68280.1 | Symbols: | Thioesterase superfamily protein |
chr1:25592467-25593595 REVERSE LENGTH=567
Length=567
Score = 737 bits (399), Expect = 0.0
Identities = 506/558 (91%), Gaps = 6/558 (1%)
Strand=Plus/Plus
Query 19 ACCGGAACGGCGGCTCCGGCAATGTCTATGGTGTTTCCGAATTCATCAAGACGACCGGTT 78
||||| |||||||||||||| |||||| |||||||||||| ||||| |||| |||||||
Sbjct 13 ACCGGCACGGCGGCTCCGGCTATGTCTGTGGTGTTTCCGACTTCATGGAGACAACCGGTT 72
Query 79 ATGCTTCCTCTCCGGAGCGCAAAGACCTTCAAGCCTCTCGCATTTCTCGATCTTAAAGGA 138
||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 73 ATGCTTCCTCTCCGGAGCGCAAAGACCTTCAAGCCTCACACATTTCTTGATCTTAAAGGA 132
Query 139 GGCAAAGGGATGAGTGAGTTCCATGAGGTTGAGCTCAAAGTTCGTGATTATGAATTGGAT 198
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 133 GGCAAAGAAATGAGTGAGTTCCATGAGGTTGAGCTTAAAGTTCGTGATTATGAATTGGAT 192
Query 199 CAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAACACGG--TCGACATG 256
||||||||||||||||||||||||||||||||||||||||| |||||||| | | || |
Sbjct 193 CAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGCCAACACGGCAT-G-CACG 250
Query 257 AGTTTCTAGAGAGTATCGGTATCAACTGTGACGAAGTAGCACGTTCTGGGGAAGCCTTAG 316
| |||||||||||||| |||||||||||||| ||||| || |||||||| ||||||||||
Sbjct 251 AATTTCTAGAGAGTATTGGTATCAACTGTGATGAAGTTGCCCGTTCTGGTGAAGCCTTAG 310
Query 317 CAATTTCAGAGTTGACAATGAAGTTCCTTGGACCTTTACGTAGCGGAGACAAATTTGTGG 376
|||| ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |
Sbjct 311 CAATATCAGAGTTGACAATGAATTTCCTTGCACCTTTACGTAGCGGAGACAAGTTTGTAG 370
Query 377 TGAAAGC-AAGGATATCGGGGACATCTGCTGCGCGTATTTACTTTGATCATTTCATCTTT 435
|||||| || ||||| | ||||||||||||||||||||||| ||||||| ||||||
Sbjct 371 TGAAAGTGAAC-ATATCTAGAACATCTGCTGCGCGTATTTACTTCGATCATTCCATCTTG 429
Query 436 AAACTTCCTAATCAAGAGCCTATATTGGAGGCTAAAGGAATAGCTGTGTGGCTTGACAAC 495
|||||||| ||||||||| |||||||||||| |||| || || ||| ||||||||||||
Sbjct 430 AAACTTCCAAATCAAGAGGTTATATTGGAGGCGAAAGCAACAGTTGTATGGCTTGACAAC 489
Query 496 AAGTACCGTCCTGTTCGTATCCCATCTTCAATACGCTCTAAATTTGTTCACTTCCTACGC 555
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 490 AAGCACCGTCCTGTTCGTATCCCATCTTCGATACGCTCTAAATTTGTTCACTTCCTACGC 549
Query 556 CAAGACGACACCGTTTGA 573
||| ||||||| ||||||
Sbjct 550 CAAAACGACACAGTTTGA 567
> AT1G35250.1 | Symbols: | Thioesterase superfamily protein |
chr1:12932941-12934479 REVERSE LENGTH=686
Length=686
Score = 496 bits (268), Expect = 1e-139
Identities = 407/473 (86%), Gaps = 14/473 (3%)
Strand=Plus/Plus
Query 85 CCTCTCCGGAGCGCAAAGACCTTCAAGCCTCTCGCATTTCTCGATCTTAAAGGAGGCAAA 144
||||||||||| ||||| | ||||||||| ||||||| |||||| || | |||| ||| |
Sbjct 93 CCTCTCCGGAGTGCAAAAATCTTCAAGCCCCTCGCATGTCTCGAACTCAGAGGAAGCACA 152
Query 145 GGGA-TGAGTGAGTTCCATGAGGTTGAGCTCAAAGTTCGTGATTATGAATTGGATCAGTT 203
|| | || ||| |||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 153 GGAATTG-GTGGGTTCCATGAGATTGAACTTAAAGTTCGTGATTATGAATTGGATCAGTT 211
Query 204 TGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAACACGGTCGACATGAGTTTCT 263
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 212 TGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGCCAACACGGTCGACACGAGTTTAT 271
Query 264 AGAGAGTATCGGTATCAACTGTGACGAAGTAGCACGTTCTGG-GGAAGCCTTAGCAATTT 322
|| |||||||||||||||||| | |||||| | |||||||| ||| ||||| ||||||
Sbjct 272 GGATAGTATCGGTATCAACTGTAATGAAGTATCCCGTTCTGGTGGA-GCCTTGGCAATTC 330
Query 323 CAGAGTTGACAATGAAGTTCCTTGGACCTTTACGTAGCGGA-GACAAATTTGTGGTGAAA 381
| ||||| ||||| |||||||||| |||||||||||| ||| | | ||||||||||||
Sbjct 331 CTGAGTTAACAATAAAGTTCCTTGCACCTTTACGTAGTGGATGT-AGGTTTGTGGTGAAA 389
Query 382 GCAAGGATATCGGGGACATCT--GCTGCGCGTATTTACTTTGATCATTTCATCTTTAAAC 439
| ||||||||||||| |||| | ||||| ||||||||||| || |||||||||||||
Sbjct 390 ACGAGGATATCGGGGATATCTTTGGTGCGC--ATTTACTTTGAACAGTTCATCTTTAAAC 447
Query 440 TTCCTAATCAAGAGCCTATATTGGAGGCTAAAGGAATAGCTGTGTGGCTTGACAACAAGT 499
|||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct 448 TTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAACGGCTGTGTGGCTTGACAACAAGT 507
Query 500 ACCGTCCTGTTCGTATCCCATCTTCAA-TACGCTCTAAATTT-GTTCACTTCC 550
|||| ||| |||| |||||||| || ||||||| | |||| | ||||||||
Sbjct 508 ACCGGCCTACTCGTGTCCCATCT-CATGTACGCTC-ATATTTTGGTCACTTCC 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5