BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475947
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68290.1 | Symbols: ENDO 2 | endonuclease 2 | chr1:25596671-... 1411 0.0
> AT1G68290.1 | Symbols: ENDO 2 | endonuclease 2 | chr1:25596671-25598438
FORWARD LENGTH=1094
Length=1094
Score = 1411 bits (764), Expect = 0.0
Identities = 863/912 (95%), Gaps = 2/912 (0%)
Strand=Plus/Plus
Query 1 AAAAACAACAACACACATTTCAAAGAACTCTGAGATGGCAAACCAAAGAGGGTTACATGT 60
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 14 AAAAACAACAACACACATTTCAAAGAACTCTGAAATGGCAAACCAAAAAGGGTTACATGT 73
Query 61 AGTGATGATGATCATCACTGTTTGGCTTCTTTATGCAGCACCTAGCATCCATGGCTGGGG 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 74 AGTGATGATGATCATCACTGTTTGGCTTCTTTATGCAGCACCTAATATCCATGGATGGGG 133
Query 121 GAAAGAAGGTCATGAAATCATCTGTAAAATCGCGCAGACTAGGTTGGATGAAACCGCAGC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 134 AAAAGAAGGTCATGAAATCATCTGTAAAATCGCTCAGACTAGGTTGGATGAAACAGCAGC 193
Query 181 AAAGGCGGTGAAAGAGCTGTTACCTGAATCCGCAGAAGGAGACTTGTCTAGCTTGTGTCT 240
|||||| ||||||||||||||||||||||| |||||||||||| | || |||||||||||
Sbjct 194 AAAGGCCGTGAAAGAGCTGTTACCTGAATCTGCAGAAGGAGACCTCTCAAGCTTGTGTCT 253
Query 241 TTGGGCTGATCGTGTCAAGTTTAGATACCACTGGTCTTCTCCTCTTCATTATATCAACAC 300
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 254 TTGGGCTGATCGTGTCAAGTTCAGATACCACTGGTCTTCTCCTCTTCATTACATCAACAC 313
Query 301 TCCTGATGCATGTTCATACCAATACAATAGGGACTGCAAGGATGAAGCTGGAGAGAAAGG 360
|||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 314 TCCTGATGCATGCTCATACCAATACAATAGGGACTGCAAGGACGAATCTGGAGAGAAAGG 373
Query 361 AAGATGTGTTGCAGGAGCCATTTACAATTACACCTCACAGCTTCTTTCCTACAACACTGC 420
|||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||
Sbjct 374 AAGATGTGTTGCGGGAGCCATTTACAACTACACCACACAGCTTCTTTCCTACAAAACTGC 433
Query 421 AGCTTCATCTCAGTCACAGTACAATTTAACCGAGGCCCTGCTCTTCGTGTCCCATTTCAT 480
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 434 AGCTTCATCTCAGTCACAATACAACTTAACCGAGGCCCTGCTCTTCGTGTCCCATTTCAT 493
Query 481 GGGTGATATCCATCAGCCTCTACATGTGGGTTACGCTTCAGACAAAGGAGGGAACACCAT 540
|||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 494 GGGTGATATCCATCAGCCTCTACATGTGAGTTATGCTTCAGACAAAGGAGGTAACACCAT 553
Query 541 CGAAGTGCACTGGTACA-GCAGAAAAGCTAACCTCCACCATATATGGGATTCCAATATTA 599
|||||| || ||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 554 CGAAGTACATTGGTACACG-AGAAAAGCTAACCTCCACCATATATGGGATTCCAACATTA 612
Query 600 TCGAAACTGCTGAAGCAGATCTCTACAACGCTGAACTAGAAGGAATGGTGGATGCACTCA 659
||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 613 TCGAAACAGCTGAAGCAGATCTCTATAACTCTGCACTAGAAGGAATGGTGGATGCACTCA 672
Query 660 AGAAGAATATCACGACAGAATGGGCTGATCAAGTCAAGAGATGGGAGAGTTGCACAAAGA 719
| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct 673 AAAAGAATATCACGACAGAATGGGCAGATCAAGTTAAGAGATGGGAGACCTGCACAAAGA 732
Query 720 AGACAGCATGCCCAGACATATATGCATCCGAAGGAATTCAAGCAGCCTGTGACTGGGCAT 779
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 733 AGACAGCATGTCCAGACATATACGCATCCGAAGGAATTCAAGCAGCCTGTGACTGGGCAT 792
Query 780 ACAAGGGGGTAACTGAAGGAGACACTCTAGAAGATGAATACTTTTATTCACGTCTACCAA 839
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 793 ACAAGGGGGTAACGGAAGGAGACACTCTAGAAGATGAATACTTCTATTCACGTCTACCGA 852
Query 840 TAGTGTATCAGCGCTTAGCACAAGGAGGGGTGAGACTGGCAGCTACCCTAAACAGGATTT 899
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 853 TAGTGTATCAGCGGTTAGCACAGGGAGGGGTGAGACTAGCAGCTACCCTAAACAGGATTT 912
Query 900 TCGGTTGAAGCT 911
||||||||||||
Sbjct 913 TCGGTTGAAGCT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5