BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475952
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1230 0.0
> AT1G68330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G48780.1);
Has 155 Blast hits to 147 proteins in 23 species: Archae -
0; Bacteria - 0; Metazoa - 19; Fungi - 3; Plants - 126; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:25610923-25612202
FORWARD LENGTH=1280
Length=1280
Score = 1230 bits (666), Expect = 0.0
Identities = 782/836 (94%), Gaps = 16/836 (2%)
Strand=Plus/Plus
Query 244 TAAGgagagagagatagagagGTTATGGCTATTGACGTTTGTTGTTCAGAGGCTTCAGGT 303
||| |||||||||| | ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 299 TAA-GAGAGAGAGA-A-AGAGGTTATGGCTATAGACGTTTGTTGTTCAGAGGCTTCTGGT 355
Query 304 TCTGGAATCAGTCCAAGAATCTCATTCTCCTACGATCTAGACTCAACGGAAGACGGTGAA 363
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 356 TCTGGAATCAGTCCAAGAATCTCATTCTCCTACGATCTAGACTCAACGGACGACGGTGAA 415
Query 364 GTCAGATTAGACTCAACACTTCTTGATTCAGGTTCGGAGTTCGATTTCTGCTTTGGCTCA 423
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 416 GTCAGATTAGACTCAACACTTCTAGATTCAGGTTCGGAGTTCGATTTTTGTTTTGGCTCA 475
Query 424 AGTTGTTCTATTCAAGAAGTGTCTCCGGCTGATGAACTCTTCTCCGAAGGCAAGATTCTT 483
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGTTGTTCTGTTCAAGAAGTGTCTCCGGCTGATGAACTCTTCTCCGAAGGCAAGATTCTT 535
Query 484 CCCGTACAGATCAAGAAAGACGAATCTTTTCCCCAGACAGTAACCTTTCGGGTTCAAAGA 543
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||
Sbjct 536 CCCGTACAGATCAAGAAAGAAGAATCTTTACCCCAGACAGTAACATTTCGGGTTCCAAGA 595
Query 544 TCAGTttcactctcatcatcatcatcatcttcttcttcctcctcttcttcctcatccAGA 603
|||| || ||||| |||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 596 TCAGCTT--CTCTC-TCATCATCATCATCTTCTTCCTCTTCCTCTTCTTCCTCATCGAGA 652
Query 604 GCACCAGAAAAGAAGATGAGACTCAAAGAGCTTCTATTGAATCCCGAATCTGATTTCGAA 663
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 653 GCACCAGAAAAGAAGATGAGACTTAAAGAGCTTCTATTGAATCCTGAATCTGATTTCGAA 712
Query 664 GACAAGCCAAGAGGACTATTCTTACAGTTCAAGAGAAGCATAAGTCTTAACTACGACAAG 723
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GACAAGCCAAGAGGATTGTTCTTACAGTTCAAGAGAAGCATAAGTCTTAACTACGACAAA 772
Query 724 AGCCGAAACAGCAAAGGGCTAATCAGATCGCTTCATTTCCTCTCACGAAGCAACTCCACT 783
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 773 AGCCGAAACAGCAAAGGGCTGATCAGATCGTTTCATTTCCTCTCACGAAGCAACTCTACT 832
Query 784 CCAAACCCTAATCTTAACTTGC-TCTCCAAGGAAACTCATCAACCTCACAAGACTCACAA 842
||||||||||| ||| |||||| || |||||||||| ||||| |||||||||||||||||
Sbjct 833 CCAAACCCTAACCTTGACTTGCTTC-CCAAGGAAACCCATCACCCTCACAAGACTCACAA 891
Query 843 TCTTCCTAAACACAAGTCTTCC-TTAAGAAGATCATCTT--CACTC-TCTTCATCAGTCC 898
||| |||||||||||| | ||| |||||||||||||||| | ||| ||||||||||| |
Sbjct 892 TCTACCTAAACACAAG-CCTCCTTTAAGAAGATCATCTTCGCTCTCTTCTTCATCAGTTC 950
Query 899 CTTATCACTC---GAAGCCACTCGGAAGAAAGAGTTTCGGAAACGGAAACGGTGGAATTC 955
||| | |||| |||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 951 CTTTTTACTCGAAGAAGCCACTCGGAAGAAACAGTTTTGGAAACGGAAACGGTGGAGTTC 1010
Query 956 GAGTCAGTCCGGTCCTGAATTTCCCACCGCCGGCGTTTATCTCAAACGTTGCCGACGGAT 1015
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1011 GAGTCAGTCCGGTCCTGAATTTCCCACCGCCGGCCTTTATCTCAAACGTTGCCGACGGAT 1070
Query 1016 TTTTCAGCATTGGATCTCTCTGTAATGGTAAGACAAACACAAAGACAAAATTGTGA 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1071 TTTTCAGCATTGGATCTCTCTGTAATGGTAAGACAAACACAAAGACAAAATTATGA 1126
Score = 261 bits (141), Expect = 1e-68
Identities = 232/272 (85%), Gaps = 22/272 (8%)
Strand=Plus/Plus
Query 1 GTGAAAACTACAACAACTGATTAGTCCCTCCATCTCCTATTGTCTCCTTCGTAAGACAAT 60
|||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1 GTGACAACTACACCAACTGATTAGTCCCTCCATCTCCTATTGTCTCCTTCATAACACAAT 60
Query 61 CTAC--aaaag--caa----------aac-aaaaa-aaaaaGCTGAAGCTGCCATTTTTG 104
|||| ||||| || | | ||||| |||||| |||||||||||||||||
Sbjct 61 CTACAAAAAAGTTGAAGCTGTCTCTTAGCAAAAAACAAAAAGTTGAAGCTGCCATTTTTG 120
Query 105 ACTTGAGGAATcttcatttttcttcctttattttgatttcaaa-tcttcttcattctgca 163
||||||||||||||||||||||||||| || ||||| |||||| ||||||||||||| |
Sbjct 121 ACTTGAGGAATCTTCATTTTTCTTCCTCTACTTTGACTTCAAATTCTTCTTCATTCTATA 180
Query 164 ttctttaatacc-t--tttttttCAAATCTTCAAGGTCTCTTTATTCTTTTCCCGAGGCT 220
|||||||| ||| | |||| |||||||||||||||||||||||||||||||| ||||
Sbjct 181 TTCTTTAACACCGTACCCTTTTCCAAATCTTCAAGGTCTCTTTATTCTTTTCCCG-GGCT 239
Query 221 TTGCCTCTTGAATGATATCAAACTAAGg-aga 251
||| ||||||||||||||||||| |||| |||
Sbjct 240 TTGGCTCTTGAATGATATCAAACAAAGGCAGA 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5