BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475952 Length=1071 Score E Sequences producing significant alignments: (Bits) Value AT1G68330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1230 0.0 > AT1G68330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48780.1); Has 155 Blast hits to 147 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 3; Plants - 126; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:25610923-25612202 FORWARD LENGTH=1280 Length=1280 Score = 1230 bits (666), Expect = 0.0 Identities = 782/836 (94%), Gaps = 16/836 (2%) Strand=Plus/Plus Query 244 TAAGgagagagagatagagagGTTATGGCTATTGACGTTTGTTGTTCAGAGGCTTCAGGT 303 ||| |||||||||| | ||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 299 TAA-GAGAGAGAGA-A-AGAGGTTATGGCTATAGACGTTTGTTGTTCAGAGGCTTCTGGT 355 Query 304 TCTGGAATCAGTCCAAGAATCTCATTCTCCTACGATCTAGACTCAACGGAAGACGGTGAA 363 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 356 TCTGGAATCAGTCCAAGAATCTCATTCTCCTACGATCTAGACTCAACGGACGACGGTGAA 415 Query 364 GTCAGATTAGACTCAACACTTCTTGATTCAGGTTCGGAGTTCGATTTCTGCTTTGGCTCA 423 ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| Sbjct 416 GTCAGATTAGACTCAACACTTCTAGATTCAGGTTCGGAGTTCGATTTTTGTTTTGGCTCA 475 Query 424 AGTTGTTCTATTCAAGAAGTGTCTCCGGCTGATGAACTCTTCTCCGAAGGCAAGATTCTT 483 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 AGTTGTTCTGTTCAAGAAGTGTCTCCGGCTGATGAACTCTTCTCCGAAGGCAAGATTCTT 535 Query 484 CCCGTACAGATCAAGAAAGACGAATCTTTTCCCCAGACAGTAACCTTTCGGGTTCAAAGA 543 |||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||| Sbjct 536 CCCGTACAGATCAAGAAAGAAGAATCTTTACCCCAGACAGTAACATTTCGGGTTCCAAGA 595 Query 544 TCAGTttcactctcatcatcatcatcatcttcttcttcctcctcttcttcctcatccAGA 603 |||| || ||||| |||||||||||||||||||| || ||||||||||||||||| ||| Sbjct 596 TCAGCTT--CTCTC-TCATCATCATCATCTTCTTCCTCTTCCTCTTCTTCCTCATCGAGA 652 Query 604 GCACCAGAAAAGAAGATGAGACTCAAAGAGCTTCTATTGAATCCCGAATCTGATTTCGAA 663 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 653 GCACCAGAAAAGAAGATGAGACTTAAAGAGCTTCTATTGAATCCTGAATCTGATTTCGAA 712 Query 664 GACAAGCCAAGAGGACTATTCTTACAGTTCAAGAGAAGCATAAGTCTTAACTACGACAAG 723 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 713 GACAAGCCAAGAGGATTGTTCTTACAGTTCAAGAGAAGCATAAGTCTTAACTACGACAAA 772 Query 724 AGCCGAAACAGCAAAGGGCTAATCAGATCGCTTCATTTCCTCTCACGAAGCAACTCCACT 783 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 773 AGCCGAAACAGCAAAGGGCTGATCAGATCGTTTCATTTCCTCTCACGAAGCAACTCTACT 832 Query 784 CCAAACCCTAATCTTAACTTGC-TCTCCAAGGAAACTCATCAACCTCACAAGACTCACAA 842 ||||||||||| ||| |||||| || |||||||||| ||||| ||||||||||||||||| Sbjct 833 CCAAACCCTAACCTTGACTTGCTTC-CCAAGGAAACCCATCACCCTCACAAGACTCACAA 891 Query 843 TCTTCCTAAACACAAGTCTTCC-TTAAGAAGATCATCTT--CACTC-TCTTCATCAGTCC 898 ||| |||||||||||| | ||| |||||||||||||||| | ||| ||||||||||| | Sbjct 892 TCTACCTAAACACAAG-CCTCCTTTAAGAAGATCATCTTCGCTCTCTTCTTCATCAGTTC 950 Query 899 CTTATCACTC---GAAGCCACTCGGAAGAAAGAGTTTCGGAAACGGAAACGGTGGAATTC 955 ||| | |||| |||||||||||||||||| ||||| |||||||||||||||||| ||| Sbjct 951 CTTTTTACTCGAAGAAGCCACTCGGAAGAAACAGTTTTGGAAACGGAAACGGTGGAGTTC 1010 Query 956 GAGTCAGTCCGGTCCTGAATTTCCCACCGCCGGCGTTTATCTCAAACGTTGCCGACGGAT 1015 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1011 GAGTCAGTCCGGTCCTGAATTTCCCACCGCCGGCCTTTATCTCAAACGTTGCCGACGGAT 1070 Query 1016 TTTTCAGCATTGGATCTCTCTGTAATGGTAAGACAAACACAAAGACAAAATTGTGA 1071 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1071 TTTTCAGCATTGGATCTCTCTGTAATGGTAAGACAAACACAAAGACAAAATTATGA 1126 Score = 261 bits (141), Expect = 1e-68 Identities = 232/272 (85%), Gaps = 22/272 (8%) Strand=Plus/Plus Query 1 GTGAAAACTACAACAACTGATTAGTCCCTCCATCTCCTATTGTCTCCTTCGTAAGACAAT 60 |||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1 GTGACAACTACACCAACTGATTAGTCCCTCCATCTCCTATTGTCTCCTTCATAACACAAT 60 Query 61 CTAC--aaaag--caa----------aac-aaaaa-aaaaaGCTGAAGCTGCCATTTTTG 104 |||| ||||| || | | ||||| |||||| ||||||||||||||||| Sbjct 61 CTACAAAAAAGTTGAAGCTGTCTCTTAGCAAAAAACAAAAAGTTGAAGCTGCCATTTTTG 120 Query 105 ACTTGAGGAATcttcatttttcttcctttattttgatttcaaa-tcttcttcattctgca 163 ||||||||||||||||||||||||||| || ||||| |||||| ||||||||||||| | Sbjct 121 ACTTGAGGAATCTTCATTTTTCTTCCTCTACTTTGACTTCAAATTCTTCTTCATTCTATA 180 Query 164 ttctttaatacc-t--tttttttCAAATCTTCAAGGTCTCTTTATTCTTTTCCCGAGGCT 220 |||||||| ||| | |||| |||||||||||||||||||||||||||||||| |||| Sbjct 181 TTCTTTAACACCGTACCCTTTTCCAAATCTTCAAGGTCTCTTTATTCTTTTCCCG-GGCT 239 Query 221 TTGCCTCTTGAATGATATCAAACTAAGg-aga 251 ||| ||||||||||||||||||| |||| ||| Sbjct 240 TTGGCTCTTGAATGATATCAAACAAAGGCAGA 271 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52459569525 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5