BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475954
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 854 0.0
> AT1G68350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; Has 20 Blast hits to 20 proteins
in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr1:25616490-25617265 FORWARD LENGTH=776
Length=776
Score = 854 bits (462), Expect = 0.0
Identities = 607/674 (90%), Gaps = 21/674 (3%)
Strand=Plus/Plus
Query 1 TTTAAATTAAAATGTCCCAAAGAAGAAGACCAATTTTCCAGAGGGTCTCGAAACTACTAA 60
||||||| |||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 16 TTTAAATCAAAATGTCCCAAAGAAGAAGACCAATTTTCCAAAGAGTTTCGAAACTACTAA 75
Query 61 AAGTCTCGATCTTGAGAAGACCCATCATCCCAAGACTCAAGCTTATTCCCATAAAACGAA 120
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 76 AAATCTCGATCTTGAGAAGACCCATCATCCCAAGACTCAAGCTAATTCCCATAAAACAAA 135
Query 121 GAAGATCATCCAAAAGGGTCAAACTCCTTCAGCAATACAACTATAAATTTCTCCAAGAGT 180
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 136 GAAG---ATCCAAAAGGGTCAAACTCCTTCAGCAACACAACTATAAATTTCTCCAAGAGT 192
Query 181 ATCAATTCTCTCCTTCAAGTACATCGC-TTATCCGATGCTGCCCGAAGAGAATTCGGTTA 239
||||||||||||||||||||||||| | ||||| ||||| |||||| |||| | ||
Sbjct 193 ATCAATTCTCTCCTTCAAGTACATC-CTTTATCAAATGCTATGGGAAGAGCATTCAGATA 251
Query 240 TCTAGTTCGAGTCTTAAACGCATTTACGGGTTATTGTTTCTTTCTCGGTGTATTGG-C-- 296
||||| ||| |||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 252 TCTAGATCGGGTCTTAAACGCATTTACGGGTTATTGTTTCTTTCTCAGTGTATCGGCCGG 311
Query 297 ---AA-G--GAT--TG-CACAATAACGCGAAGTTGGATGGAGATGGAGCCTTTGCATTGT 347
|| | || || ||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 312 TATAATGAAAATGATGACACAATAACGCAAAGTTGGATGGAGATGGAGCCTTTTCATTAT 371
Query 348 GCCCTTAAAGTTGCTTCTCCTACAAGGGAGCTTCTGCATCCGTTCGATTACTTCAGCGAA 407
||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||||
Sbjct 372 GCCCTCGGAGTTGCTTCTCCTGCAAGGGAGCATCTGCAGCCGTTCGATTACTTCAGCGAA 431
Query 408 GATGATTCAATTGACGTGAAGGCTGAGAGATTCATCGAAAAGTTCTACGATGAGATGAGG 467
|||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 432 GATGATTCGATTGACTTGAAGGCTGAGAGATTCATCGAAAAGTTCTATGATGAGATGAGA 491
Query 468 ATGCAGGCGCGGGAATTTGCTTGATTGATCAAACGTCAAGTG---TTAATTActttttga 524
||||||||||| |||||||||||||||| |||| |||||||| |||||||||||||||
Sbjct 492 ATGCAGGCGCGAGAATTTGCTTGATTGACCAAATGTCAAGTGTTATTAATTACTTTTTGA 551
Query 525 attttggaatctttttttcttgtgttagttttctttttACACGTGATTGGTATTGTTAAT 584
|||| ||| |||||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 552 ATTTGGGATTCTTTTCTACTTGTGTTAGTTTTC-TTTTACACGTGATTGGTATTGTTAAT 610
Query 585 TGTCTCCGCATCATATTTAAGATCTTGGAGACTCAGTTATTTCGCTTTATATGAGTATTT 644
||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 611 TGTCTCCACATCATATTTAAGATCTTGGAGACTCAGTTATTTCGCTCTATTTGAGTATTT 670
Query 645 GATTCTATCAATTT 658
||||||||| ||||
Sbjct 671 GATTCTATCCATTT 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31798215051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5