BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475957
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68380.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1810 0.0
> AT1G68380.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:25635838-25637462
REVERSE LENGTH=1343
Length=1343
Score = 1810 bits (980), Expect = 0.0
Identities = 1166/1255 (93%), Gaps = 16/1255 (1%)
Strand=Plus/Plus
Query 1 TTTTAACCCTTAAAACATTGAAAACAAGAATTCTCCTACACATGTACCGGTAGTTGGAAA 60
|||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||
Sbjct 11 TTTTAACCCTTAAAACATTGGAAACAAGAATTCTCTTACACATGTATCGGTAGTTGGAAA 70
Query 61 TGCCGACCCAAAAGGACCAAAACTCACAATTATCTCTACTGATAGAGCTTCTCAAGAAAC 120
||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 71 TGCCGACCCAAAAGGACCAAAACTCACCATTATCTCAAGTGATAGAGCTTCTCAAGAAAC 130
Query 121 TACTCAACCATTTCCACAATCTCCTTTTGTATTTCCCCATCCTCTGGATCACCGTGATAG 180
||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 131 TACTCCACCATTTCCACAATCTCCTTTTGTATTTCTTCATCCTCTGGATCGGCGTGATAG 190
Query 181 TCGGAATCATTGTTTATTCCTCTCTACAAGCAATATCTTCGCCTTCTTCGCTAACCGTCC 240
| ||||||||||||||| |||||||||||| | ||||||||||||||||| ||||| |||
Sbjct 191 TTGGAATCATTGTTTATCCCTCTCTACAAGGATTATCTTCGCCTTCTTCGTTAACCATCC 250
Query 241 AAAGTGTCTCCCAACTCTTCTTTGTAACCTCTCCTCCTCCTATTCCTTCTCCTTCATTTC 300
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 251 AAAGTGTCTCCCAACTCTTCTTTGTAACCCCTCCTCCTCCTATTCTTTCTCCTTCATTTC 310
Query 301 AGGAAAATGGGCTCGAAAAGTTTCTGA-AGCCAAC-GAAGAACATCATGCACGGA-ATGG 357
|||| |||||||| || | |||||||| | || || |||||||||||||||| || ||||
Sbjct 311 AGGACAATGGGCTTGACATGTTTCTGATA-CC-ACTGAAGAACATCATGCAC-GATATGG 367
Query 358 AAGACAATGAGCTTCTGTGGAGAGCTTCAATGGATCCCAAGATCAGAGG-TTACCCTTAT 416
|||| ||||| |||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 368 AAGATAATGAACTTCTGTGGAGAGCTTCAATGGATCCTAAGATCAG-GGATTACCCTTAT 426
Query 417 CCTAGAATCCCAAAGGTTGCTTTCATGTTCTTGACTTGGGGACCTTTACCTTTGGCTCCT 476
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CCTAGAATCCCGAAGGTTGCTTTCATGTTCTTGACTTGGGGACCTTTACCTTTGGCTCCT 486
Query 477 CTTTGGGAAAGGTTCTTTCGTGGGCATGAAGGTCTTTTCACTATCTACGTTCACACCAAT 536
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 487 CTATGGGAAAGGTTCTTTCGAGGTCATGAAGGTCTTTTCACTATCTACGTTCACACCAAT 546
Query 537 TCGTCTTACGACGAGTTCATGCTC-CAAGGCTCTGTGTTTTATGGCCGCCGTATTCCAAG 595
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 547 TCGTCTTACGACGAGTTCATGC-CGCAAGACTCTGTGTTTTATGGCCGCCGTATTCCAAG 605
Query 596 CAAGAGAGTGGATTGGGGAAACGCAAACATGGTAGAAGCAGAACGAAGGTTACTAGCAAA 655
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 606 CAAGAGAGTGGATTGGGGAAACGCAAACATGGTAGAAGCAGAACGAAGGTTATTAGCAAA 665
Query 656 CGCTTTATTAGACATCAACAACGAACGTTTTATTCTTCTCTCCGAATCATGCATCCCTCT 715
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 666 CGCTTTATTAGACATCAACAACGAACGTTTCATTCTTCTCTCCGAATCATGCATCCCTCT 725
Query 716 CTTCAACTTCACCACAATTTACTCTTTCCTCATCGAATCCACTCTAACCCACGTCGACTC 775
|||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 726 CTTCAACTTCTCCACAGTTTACTCTTTCCTCATCGACTCCACTCTAACCCACGTCGACTC 785
Query 776 CTACGACCTCCCCATTGG-CTGCGTCCGTTATGACCGCCGCATGTATCCTCACATCCACA 834
|||||||||| | || || | ||||||| |||||||||||||||||||||||||||| ||
Sbjct 786 CTACGACCTCACAATCGGTC-GCGTCCGCTATGACCGCCGCATGTATCCTCACATCCGCA 844
Query 835 TGCATCACTGGCGCAAAGGCTCTCAGTGGTTCGAGCTAGACAGAGCCATGGCCCTTGAGG 894
|||| || ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 845 TGCACCAATGGCGAAAAGGCTCTCAGTGGTTCGAGCTAGACCGAGCCATGGCCCTCGAGG 904
Query 895 TCGTCTCCGATACGATT-TACTGGCCAATCTTTAAAGCTTACTCTCGCTACCCCGACGAG 953
| ||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 905 TAGTCTCTGATACG-TTCTACTGGCCAATCTTTAAAGCTTACTCTCGCTGCCCCGACGAG 963
Query 954 CACTATATCCCAACGTTATTCAATATGAGGCTGAGGCTCGGGTCGCGAAATGCCAACAGG 1013
||||||||||| ||| || |||| ||||||| ||| || |||| ||| || || || |||
Sbjct 964 CACTATATCCCGACGCTACTCAACATGAGGCCGAGCCTTGGGTTGCGTAACGCGAATAGG 1023
Query 1014 ACGCTTACTTGGACAGACTGGAGAAAGCGTAGGGCTCACCCGAGGTTGTTTGGTGAGTGG 1073
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1024 ACGCTTACTTGGACTGACTGGAGCAAGCGTAGGGCTCACCCGAGATTGTTTGGTGAGTGG 1083
Query 1074 GAGGTCAATGTGGAGTTCTTGGAGTGGCTAAGGATGAAGAGTGTTGGTGATTGTGAGAAA 1133
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1084 GAGGTTAATGTGGAGTTCTTGGAGTGGCTAAGGATGAAGAGTGTTGGTGATTGTAAGAAA 1143
Query 1134 AATGGAGAAAATAAGATAAAATTTTGCTTTCTCTTTGCTCGCAAGTTTTCGTCGACTACT 1193
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1144 AATGGAGAAAATAAGATGAGACTTTGCTTTCTCTTTGCTCGCAAGTTTTCGTCGACTGCT 1203
Query 1194 TTGGATAAGTTGCTCCGGTTAGCATCTACCGTCATGTATTTCTGA-C-CTCTCTT 1246
|||||| |||| |||||||||||||||| |||||||||||||||| | |||||||
Sbjct 1204 TTGGATGAGTTACTCCGGTTAGCATCTATCGTCATGTATTTCTGATCACTCTCTT 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61395266535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5