BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475958
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68390.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2047 0.0
> AT1G68390.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:25642734-25645607
FORWARD LENGTH=1454
Length=1454
Score = 2047 bits (1108), Expect = 0.0
Identities = 1306/1400 (93%), Gaps = 20/1400 (1%)
Strand=Plus/Plus
Query 1 GGTATCGTATCTCTTGCCCTTAAAGCAAAGAACTTGTCTCTCCTTCTCCATTCACTCCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTATCGTATCTCTTGCCCTTAAAGCAAAGAACTTGTCTCTCCTTCTCCATTCACTCCTC 60
Query 61 TTTTGGAACATCACAAGCACACAACAAAGATTCTCTCTGTCTCTGTCTCAATGAAGAACC 120
||||||||||||||||| ||| || | || ||||| |||||||| |||||||||||||
Sbjct 61 TTTTGGAACATCACAAG--CAC-AC--A-ATCCTCTCCGTCTCTGTTTCAATGAAGAACC 114
Query 121 AAAAGGATCAAAACTCATCATCATTTTCCTCTTCATCACCATCTCTAACAACAAAGCTTC 180
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 115 AAAAGGATCAAAACTCATCATCATTGTCTTCTTCATCACCATCTCTAACAACAAAGCTTC 174
Query 181 TCAATGCTCAATACCATCACTTCCTCAATCTCCTTTCGTATTCCCTTATCCTCTGTTGCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TCAATGCTCAATACCATCACTTCCTCAATCTCCTTTCGTATTCCCTTATCCTCTGTTGCG 234
Query 241 GTATAATCTTCGGTATCCTTCTCCATTCTTCTCTACAAGACTTCTCTTCCACTTCTTCAC 300
|||| ||| |||| |||||||||||||| ||||||||| |||||||||| | ||||||||
Sbjct 235 GTATCATCATCGGCATCCTTCTCCATTCCTCTCTACAAAACTTCTCTTCAAATTCTTCAC 294
Query 301 TCAGCATCCAACGCAtctctcagc--tct-t--cctcgtcacct-ct-c-t-tcctcctc 351
| |||||||||||||| ||||||| | | | ||| || | | || | | ||||||||
Sbjct 295 TTAGCATCCAACGCATATCTCAGCTATTTATAGTCTCTTCTCTTCCTCCTTCTCCTCCTC 354
Query 352 ctcctcctcctccttctcctccATCTGAGCTAGAGCTTGATGGGCTCGAACGCTTTATCA 411
|||||||||||||||||||||| ||||||| |||| |||||||| || |||||||
Sbjct 355 CTCCTCCTCCTCCTTCTCCTCCTTCTGAGCCCGAGCAAAATGGGCTCAAAAGCTTTATTG 414
Query 412 AGCCACCAGAGAAGCTTATGCACGACATGGAAGACGAAGAGCTTCTATGGAGAGCTTCTA 471
||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 415 AGCCACCGGAGAAGCTTATGCACGACATGGAGGACGAAGAGCTTCTCTGGAGAGCTTCAA 474
Query 472 TGGCACCTAAGATCAAGAATTACCCTTTTCCTCGAACACCAAAGGTTGCTTTCATGTTCA 531
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 475 TGGCGCCTAAGATCAAGAATTACCCTTTTCCTCGAACGCCAAAGGTTGCTTTCATGTTCA 534
Query 532 TGACAAAGGGTCATTTACCTCTAGCTCGTCTGTGGGAGAGATTCTTTCGAGGGCATGAAC 591
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 535 TGACAAAGGGTCATTTACCTCTAGCTCGTCTATGGGAGAGATTCTTTCGTGGGCATGAAG 594
Query 592 ATCTTTTTACTATCTACGTTCACTCATATCCTTCTTATAACCAGTCCGATCCCGAAGATT 651
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 595 GTCTTTTTACTATCTACGTTCACTCTTATCCTTCTTATAACCAGTCCGATCCCGAAGATT 654
Query 652 CCGTCTTCCATGGCCGCCACATTCCAAGCAAGAGAGTGGATTGGGGATATGTGAATATGG 711
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 655 CCGTCTTCCGTGGCCGCCACATTCCAAGCAAGAGAGTGGATTGGGGATATGTGAACATGG 714
Query 712 TGGAAGCAGAACAAAGACTACTAGCAAATGCTTTATTAGACATATCAAACGAACGATTTG 771
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 715 TGGAAGCAGAACAAAGATTACTAGCAAATGCTTTATTAGACATATCAAACGAACGATTCG 774
Query 772 TACTTCTCTCCGAATCATGCATCCCTCTTTTCAACTTCACCACTGTTTACTCTTACCTCA 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 775 TACTTCTCTCCGAATCATGCATCCCTCTTTTCAACTTCACCACTGTTTACTCTTACCTTA 834
Query 832 TTAACTCAACTCAAACTCACGTTGAGTCCTATGACCAACTTGGTGGCGTTGGACGTGGCC 891
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 835 TTAACTCAACTCAAACTCACGTTGAGTCCTACGACCAACTTGGTGGCGTTGGACGCGGCC 894
Query 892 GATACAGCCCTCTAATGCAGCCACATGTCCAGCTACACCACTGGCGCAAAGGCTCCCAGT 951
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 895 GATACAGCCCTCTAATGCAGCCACATGTCCAGCTACGCCACTGGCGCAAAGGCTCCCAAT 954
Query 952 GGTTCGAGGTGGACCGTGACATGGCTCTTGAGATCATCTCCGATAGAATATATTGGCCTC 1011
|| |||| |||||||||| ||||||||||||||| |||||||||||||| || |||||||
Sbjct 955 GGATCGAAGTGGACCGTGCCATGGCTCTTGAGATTATCTCCGATAGAATCTACTGGCCTC 1014
Query 1012 TCTTTTATAGTTACTGCCACCACGGTTGCTACGCGGACGAGCACTACATTCCTACACTAC 1071
||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |
Sbjct 1015 TCTTTTATAGTTATTGCCACCATGGTTGCTACGCCGACGAGCACTATATTCCTACACTCC 1074
Query 1072 TCAACATCAAATCAAGCCTGAACCATCGCAACTCGAACCGGACTCTCACGTGGGTCGACT 1131
|||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 1075 TCAACATCAAATCAAGCCTGAAACGGCGCAACTCCAACCGGACTCTCACGTGGGTCGACT 1134
Query 1132 GGTCGAAAGGTGGCCCGCACCCGAACCGGTTTATTAGACACGAGGTGACTGCAGAGTTCA 1191
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1135 GGTCGAAAGGTGGCCCGCACCCTAACCGGTTTATTAGACACGAGGTGACTGCGGAGTTCA 1194
Query 1192 TGGAGAATCTGAGGAGTGGAGGTGAGTGTCTCTACAATGGAGAAGAGACGAATATTTGTT 1251
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TGGAGAACCTAAGGAGTGGTGGTGAGTGTCTCTACAATGGAGAAGAGACGAATATTTGTT 1254
Query 1252 ATTTATTTGCTCGCAAGTTCTTGCCTACTGCTCTCGACCGGTTGCTCAGGCTTTCACGTA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ATTTATTTGCTCGCAAGTTCTTGCCTACTGCTCTCGACCGGTTGCTCAGGCTTTCACGTA 1314
Query 1312 CTGttttatatttctgattattattattcttctttcatttattttttttatttttcaatt 1371
|||||||| ||||||||||||| || | ||| |||||| ||||||||| |||||||||||
Sbjct 1315 CTGTTTTACATTTCTGATTATT-TT-T-CTTTTTTCATATATTTTTTTAATTTTTCAATT 1371
Query 1372 -t-cACTGTAATATTGTATA 1389
| ||| |||||||||||||
Sbjct 1372 CTTCACCGTAATATTGTATA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5