BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475959
Length=2144
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68400.1 | Symbols: | leucine-rich repeat transmembrane pro... 3099 0.0
> AT1G68400.1 | Symbols: | leucine-rich repeat transmembrane protein
kinase family protein | chr1:25646039-25648946 REVERSE
LENGTH=2405
Length=2405
Score = 3099 bits (1678), Expect = 0.0
Identities = 2013/2169 (93%), Gaps = 45/2169 (2%)
Strand=Plus/Plus
Query 1 CAACAATGGCCAAAAGctctttcttcaataagcatttgcttctctctcttcttcactgtt 60
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||
Sbjct 26 CAACAATGGCCAAAAGCTCTTTCTTCAACAAGCATTTGCTTCTCTCTCTTC-TCATTCTT 84
Query 61 gt-c--tcct-t-t-ct-tcttcttcttcaacct-ccgactcagaaactctcttGAACTT 112
| | || | | || ||||||||||||| | |||| ||||||||||||||||||||
Sbjct 85 CTCCAAAGCTGTCTACTCTCTTCTTCTTCAA-GTACCGATTCAGAAACTCTCTTGAACTT 143
Query 113 CAAACTCACTGCAGATTCCACCGGAAAACTAAACTCAAGGAACACAACAACAAACCCATG 172
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 144 CAAACTCACCGCAGATTCCACCGGAAAACTAAACTCATGGAACACAACAACAAACCCATG 203
Query 173 TCAATGGACCGGAGTCTCCTGCAACCGCAACAGAGTCACAAGACTTGTCCTCGAAGACAT 232
||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 204 CCAATGGACCGGAGTCTCCTGCAACCGCAACAGAGTCACACGACTCGTACTCGAAGACAT 263
Query 233 CGAA-CTCACCGGGTCAATCTCACCACTAACCTCACTCACTTCCCTCAGAGTTCTCAGTC 291
| || |||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 264 C-AATCTCACCGGGTCAATCTCATCACTAACCTCACTCACATCACTCAGAGTTCTCAGTC 322
Query 292 TTAAACATAACAATCTCTCTGGTCCAATCCCAAACCTCTCGAACCTCACAGCTTTAAAGC 351
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TGAAACATAACAATCTCTCTGGTCCAATCCCAAACCTCTCGAACCTCACAGCTTTAAAGC 382
Query 352 TTCTCTTTTTATCACACAACCAATTCTCCGGTAACTTTCCTTCATCAATCACTTCACTCG 411
|||||||||||||| |||||||||||||||||||||| || | |||||||||||||||
Sbjct 383 TTCTCTTTTTATCAAACAACCAATTCTCCGGTAACTTCCCCACTTCAATCACTTCACTCA 442
Query 412 CTCGTCTCTACCGTCTTGATCTCTCTTTCAACAACTTCTCCGGCGAGATTCCACCGGATT 471
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 443 CTCGTCTCTACCGTCTTGATCTCTCTTTCAACAACTTCTCCGGCCAGATTCCACCGGATT 502
Query 472 TAACCAATTTAAACCATCTCCTCACTCTCCGGTTAGAATCAAACCGGTTCTCCGGTCAGA 531
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 503 TAACCGATTTAACCCATCTCCTCACTCTCCGGTTAGAATCAAACCGGTTCTCCGGTCAAA 562
Query 532 TACCGAACATCATCATCTCCGATTTACAAGACTTCAACGTCTCCGGTAACAACTTTAACG 591
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TACCGAACATCAACCTCTCCGATTTACAAGACTTCAACGTCTCCGGTAACAACTTTAACG 622
Query 592 GTCAGATACCAAATTCATTGTCTCAATTCCCTGAATCAGTCTTTACACAAAACCCATCTC 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 GTCAGATACCAAATTCATTGTCTCAATTCCCTGAATCAGTCTTTACACAAAACCCATCTC 682
Query 652 TCTGTGGAG-TACCATTGCTAAAATGCACCAAGCTCTCTAGCGACCCGACTAAACCGGGT 710
||||||||| | |||||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 683 TCTGTGGAGCT-CCATTGCTGAAATGCACGAAACTCTCTAGTGACCCGACTAAACCGGGT 741
Query 711 CGACCCGATGGAGCAAAGGCTTCTCCTTTAAACAA-CTCGGAAACTGTACCTTCATCTCC 769
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 742 CGACCCGATGAAGCAAAGGCTTCTCCTTTAAACAAGC-CGGAAACTGTACCTTCATCTCC 800
Query 770 AACTTCAATTCACGGCGGCGACAAAAGCA-CGACG-A----GAATCAGCACCATCTCACT 823
||||||||||||||||||||||||||||| | || | |||||||||||||||||||
Sbjct 801 AACTTCAATTCACGGCGGCGACAAAAGCAACAACACATCAAGAATCAGCACCATCTCACT 860
Query 824 -AGTAGCTATCATCCTCGGAGACTTCATTATCTTATGCTTTGTCTCTCTTCTTCTCTACT 882
| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 861 TA-TAGCTATCATCCTCGGAGACTTTATTATCTTAAGCTTTGTCTCTCTTCTTCTCTACT 919
Query 883 ACTGTTTCTGGAGACAATACGCAGTGAACAAGAAGAAACACTCAAAGGTTCTTGAAGGAG 942
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 920 ACTGTTTCTGGAGACAATACGCAGTGAACAAGAAGAAACACTCGAAGATTCTTGAAGGAG 979
Query 943 AGAAGATTGTTTACTCATCAAGTCCTTACCCAACATCATCCCAAAACAACAACAATCAGA 1002
| |||||||| |||||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 980 AAAAGATTGTCTACTCATCAAATCCTTACCCAACATCAACGCAAAACAACAACAATCAGA 1039
Query 1003 ATCAACAAGGTGGTGAGAAGGGTAAAATGGTCTTTTTCGAAGGAACTAGACGTTTTGAGC 1062
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 ATCAACAAGTTGGTGATAAGGGTAAAATGGTCTTTTTCGAAGGAACTAGACGTTTTGAG- 1098
Query 1063 TT-GAAGATCTTCTCAGAGCATCGGCGGAGATGTTAGGTAAAGGAGGATTCGGGACGGCG 1121
|| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1099 TTAGAAGATCTTCTCCGAGCATCGGCGGAGATGTTAGGGAAAGGAGGATTCGGGACGGCG 1158
Query 1122 TACAAAGCCGTGCTTGAGGACGGCAATGAGGTTGCGGTGAAGCGGCTTAAA-GACGCGGT 1180
||||| || || ||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1159 TACAAGGCGGTTCTTGAGGACGGCAATGAGGTTGCGGTGAAGCGG-TTAAAAGATGCGGT 1217
Query 1181 TACGGTGGCCGGaaaaaaaGAGTTTGAGCAACAAATGGAGGTTTTAGGAAGGCTTCGTCA 1240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1218 GACGGTGGCCGGAAAAAAAGAGTTTGAGCAACAGATGGAGGTTTTAGGAAGGCTTCGTCA 1277
Query 1241 TACTAATCTTGTGAGCTTAAAAGCTTATTACTTTGCTAGAGAAGAGAAGCTTCTTGTTTA 1300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TACTAATCTTGTGAGCTTAAAGGCTTATTACTTTGCTAGAGAAGAGAAGCTTCTTGTTTA 1337
Query 1301 TGATTACATGCCTAATGGTAGTCTCTTCTGGCTTCTCCATGGAAACCGTGGACCCGGTAG 1360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1338 TGATTACATGCCTAATGGTAGTCTCTTCTGGCTTCTCCATGGAAACCGTGGACCGGGTCG 1397
Query 1361 GACTCCATTGGACTGGACCACGCGCCTTAAGATTGCAGCGGGTGCAGCGCGTGGCTTAGC 1420
|||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 1398 GACTCCTTTGGACTGGACCACGCGCCTTAAGATCGCAGCGGGGGCGGCGCGTGGCTTAGC 1457
Query 1421 TTTCATCCATGGCTCGTGTAATACCTTAAAGCTCACACACGGTGACATCAAATCCACCAA 1480
||||||||| || |||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct 1458 TTTCATCCACGGTTCGTGTAAAACCTTGAAGCTCACGCACGGTGATATCAAATCCACCAA 1517
Query 1481 TGTGCTACTCGATAGATCAGGCAATGCTCGTGTTTCCGATTTTGGGCTATCTATTTTCGC 1540
||||||||| || |||||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 1518 TGTGCTACTAGACCGATCAGGCAACGCTCGTGTTTCGGATTTCGGGCTATCTATCTTCGC 1577
Query 1541 GCCATTGCAAACTGTTGCTAAATCCAATGGCTACCGTGCACCGGAGCTGACTGATGGTCG 1600
||||| |||||| ||||| ||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 1578 GCCATCGCAAACCGTTGCAAAATCTAATGGCTACCGTGCACCGGAGCTGATTGATGGCCG 1637
Query 1601 AAAACACACGCA-AAAGTCTGACGTTTACTCATTTGGAGTGCTTCTTTTGGAGATTCTCA 1659
||||||||| || ||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1638 AAAACACACTCAGAAA-TCCGACGTTTACTCATTTGGAGTGCTCCTTTTGGAGATTCTCA 1696
Query 1660 CTGGGAAATGTCCTAATATGGTGGAGACGGGTCATTCGGGTGGTGCGGGTGGGGCGGTGG 1719
|||| ||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1697 CTGGAAAATGTCCTAATATGGTGGAGACGGGTCACTCGGGTGGTGCGG-TGG-------- 1747
Query 1720 ATTTACCGAGATGGGTCCAGTCGGTGGTGAGAGAGGAGTGGACGGCTGAAGTGTTTGATT 1779
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1748 ATTTACCAAGATGGGTCCAATCAGTGGTGAGAGAGGAGTGGACGGCTGAAGTGTTTGATT 1807
Query 1780 TGGAGCTTATGAGGTATAAGGATATAGAGGAAGAGATGGTGGGGTTGTTGCAGATTGCTA 1839
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1808 TGGAGCTGATGAGGTATAAGGATATAGAGGAAGAAATGGTGGGGTTGTTGCAGATTGCTA 1867
Query 1840 TGGCGTGCACGGCGGTTGCGGCGGATCACCGTCCAAAGATGGGTCATGTTGTGAAGTTGA 1899
||||||| || || ||||| |||||||| ||||| |||||||||||||| ||||||||||
Sbjct 1868 TGGCGTGTACCGCAGTTGCCGCGGATCATCGTCCGAAGATGGGTCATGTGGTGAAGTTGA 1927
Query 1900 TAGAGGATATACGTGGTGGTGGCTCTGAGACCTCACCGTGCAATGATGGGATCAATTCTG 1959
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1928 TAGAGGATATACGTGGTGGTGGCTCTGAGGCCTCGCCGTGCAATGATGGGATCAATTCTG 1987
Query 1960 CGGTGGACTCACCGTGCTTGTCCGAGGACACTTGCGGTGGGACTACGAGTCAGTAGTAAG 2019
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1988 CGGTGGACTCGCCGTGCTTGTCCGAGGACACTTGCGGTGGGACTACGAGTCAGTAGTAAG 2047
Query 2020 ATT-CGTTTACTTAAAAAATGTAAATCACGTGCTTAGAATCTTGACTTTT--CATTCTTC 2076
||| | ||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 2048 ATTTC-TTTACTTGAAAAATGTAAATCACGTGCCTAGAATCTTGACTTTTGTCATTCGTC 2106
Query 2077 TGAAATCATAACACTTCTAGTGTCGTAGGCttt-gttttttctttgtttcttttAAGTTT 2135
||||||| |||||||||||| |||||||||||| ||| ||| |||||||| |||| ||||
Sbjct 2107 TGAAATCCTAACACTTCTAGAGTCGTAGGCTTTTGTTCTTTGTTTGTTTCCTTTA-GTTT 2165
Query 2136 GTAATACGA 2144
|||| ||||
Sbjct 2166 GTAACACGA 2174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106324754310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5