BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475966
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68460.1 | Symbols: ATIPT1, IPT1 | isopentenyltransferase 1 ... 1892 0.0
> AT1G68460.1 | Symbols: ATIPT1, IPT1 | isopentenyltransferase
1 | chr1:25668610-25670182 REVERSE LENGTH=1573
Length=1573
Score = 1892 bits (1024), Expect = 0.0
Identities = 1228/1320 (93%), Gaps = 40/1320 (3%)
Strand=Plus/Plus
Query 1 ACCACCTCCATTGAAGTGAAGAAGCTTGAGAGAGACAAAAAGAGAGATTATATTGTAGTG 60
||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||
Sbjct 1 ACCACCTCCATTGAAGT---GAAGCTTGAGAAAGACAAAAAGAGAGATTGTA---TAGTG 54
Query 61 TGGTGCATCGTTTCAAAAACAC-ACAACAAAAAGAACCGTACGAAACTTTTGTCTCTTTC 119
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 55 TGGTGCATCGTTTC-AAAACACAACAACAAAAAGAACCGTACGAAACTTTTGTCTCTTTC 113
Query 120 C--G-TGTTGTTGTTAGCTAATGACAGAACTCAACTTCCTCCTCCTCCCAATAATCTCCG 176
| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 114 CGTGTTGTTGTTGTTAGCTAATGACAGAACTCAACTTCCACCTCCTCCCAATAATCTCCG 173
Query 177 ATCGCTTCAC--C-ACGACGACGACGTCACCGtc-tt-tc-t--ca-tc-ac--attctt 224
|||||||||| | |||||||| || |||||||| || || | || || | |||||
Sbjct 174 ATCGCTTCACGACGACGACGACAACATCACCGTCGTTCTCGTCACATTCTTCTTCTTCTT 233
Query 225 cttctcttctctctttcACCAAACGGAGACGAAAACACCAACCTTTAGTATCCTCCATAC 284
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 234 CTTCTCTTCTCTCTTTCACCAAACGAAGACGAAAACACCAACCTTTAGTATCATCCATAC 293
Query 285 GCATGGAACAGTCACAGTCACAAAATCGAAAAGACAAAGTCGTCGTCATTTTAGGAGCCA 344
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 294 GCATGGAACAGTCACGGTCACGGAATCGGAAAGACAAAGTCGTCGTCATTTTAGGAGCAA 353
Query 345 CCGGCGCCGGAAAATCAAGACTTTCCGTCGATCTCGCCACTCGTTTTCCTTCAGAGATCA 404
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 354 CCGGCGCCGGAAAATCAAGACTTTCCGTCGATCTCGCTACTCGTTTCCCTTCAGAGATCA 413
Query 405 TAAACTCCGATAAAATCCAAGTCTACGAAGGATTAGAGATCACAACGAATCAGATTACGT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TAAACTCCGATAAAATCCAAGTCTACGAAGGATTAGAGATCACAACGAATCAGATTACGT 473
Query 465 TACCAGACCGTCGCGGCGTTCCTCACCATCTCCTCGGCGTTTTAAACCCCGAACACGGTG 524
||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 474 TACAAGACCGTCGCGGCGTTCCTCACCATCTCCTCGGCGTCATCAACCCCGAACACGGCG 533
Query 525 AACTCACCGCCGGAGAGTTTCGCTCCGCCGCTTCAAATGTCGTCAAAGAGATAACCACTC 584
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 534 AACTAACCGCCGGAGAGTTTCGCTCCGCCGCTTCAAACGTCGTCAAAGAGATAACTTCTC 593
Query 585 GTCAAAAGCTTCCGATAATCGCCGGTGGATCTAACTCTTTCGTTCACGCAGTCTTAGCTC 644
|||||||| ||||||| |||||||||||||||||||||||||| |||||| |||||||||
Sbjct 594 GTCAAAAGGTTCCGATTATCGCCGGTGGATCTAACTCTTTCGTCCACGCACTCTTAGCTC 653
Query 645 AACGATTCGACCCAAAGATCGATCCTTTTTCTTCCGGGTCGGGTTTAATCAGCTCCGATT 704
||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 654 AACGATTCGACCCAAAGTTCGATCCTTTTTCATCCGGGTCGTGTTTAATCAGCTCCGATT 713
Query 705 TGCGTTACAAGTGTTGTTTCATCTGGGTCGATGTATCGGAGACTGTACTTTACGATTATC 764
|||||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 714 TGCGTTACGAGTGTTGTTTCATCTGGGTCGATGTATCGGAGACTGTTCTCTACGAGTATC 773
Query 765 TTCTCAAAAGAGTCGACGAAATGATGGATTCAGGTATGTTCGAAGAGCTATCTGGATTCT 824
|||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 774 TTCTCAGAAGAGTCGACGAAATGATGGATTCAGGTATGTTCGAAGAGCTGTCTAGATTCT 833
Query 825 ACGACCCGGTTAAATCCGGTTTA-AAACCCCGGTTTGGGATTCGGAAAGCTATAGGTGTA 883
||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 834 ACGACCCGGTTAAATCCGGTTTAGAAACCC-GGTTTGGGATTAGGAAAGCTATAGGTGTA 892
Query 884 CCGGAGTTTGACGGTTACTTCAAAGAGTATCCACCGGAGAAGA---TGATAAAGTGGGAC 940
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 893 CCGGAGTTTGACGGTTACTTCAAAGAGTATCCACCGGAGAAGAAGATGATAAAGTGGGAC 952
Query 941 GATGCTTTAAGAAAAGCGGCGTACGATAAGGCGGTGGAGGATATCAAAAGGAACACGTGG 1000
| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 953 G---CTTTAAGAAAAGCGGCGTACGATAAGGCGGTTGATGATATCAAAAGGAACACGTGG 1009
Query 1001 ACGTTAGCGAAGAGACA-GATAAAGAAGATAGAGATGCTAAAAGACGCTGGTTGGGAAAT 1059
||||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||
Sbjct 1010 ACGTTAGCGAAGAGACAAG-TGAAGAAGATTGAGATGCTAAAAGACGCTGGTTGGGAAAT 1068
Query 1060 AGAAAGAGTTGATGCAACGGCGTCGTTTAAAGCGGTGATGATGAAGAATTCGTCGGAGAA 1119
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1069 AGAAAGAGTTGATGCAACGGCGTCGTTTAAAGCAGTGATGATGAAGAGTTCGTCGGAGAA 1128
Query 1120 GAAGTGGAGAGAGATTTGGGAAGAGCAAGTGTTGGAGCCAAGCGTAAAGATTGTGAACCG 1179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1129 GAAGTGGAGAGAGAATTGGGAAGAGCAAGTGTTGGAGCCAAGCGTAAAGATTGTGAAGCG 1188
Query 1180 GCATTTGGTGGAAGATTAGGtttttttttttgttttt-ccagctattttacagctcattt 1238
|||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1189 GCATTTGGTGCAAAATTAG-TTTTTTTTTTTGTTTTTTCCAGCTATTTTACAGCTCATTT 1247
Query 1239 ttgggaactatttttGAAATAATAAAATTGGAAGaaaaaaaaGACAtttttttGCTGTTG 1298
||||||||||||||||||||||||| |||||| |||| | |||||||||||| |||||
Sbjct 1248 TTGGGAACTATTTTTGAAATAATAA--TTGGAA-AAAAGA--GACATTTTTTTGTTGTTG 1302
Score = 148 bits (80), Expect = 1e-34
Identities = 124/143 (87%), Gaps = 11/143 (8%)
Strand=Plus/Plus
Query 1327 ttttttGTGTAATGTGTACCATATATTTTTTCAAAAGTTATAATTTTGATTTAAAG-TTT 1385
|||||| ||||||||||||| ||||||||||||| | |||||||||||| |||
Sbjct 1439 TTTTTTATGTAATGTGTACC----ATTTTTTCAAAAG---T--GTTTGATTTAAAGTTTT 1489
Query 1386 TGATCGTTAGGAAAATTAGGAGC-TCTTTTTTCCTTGTTTGTTTGTTGTAGTCTGCAGAA 1444
||||| ||||||||||||||||| | || ||| ||||||||||||||||||||||||||
Sbjct 1490 TGATCTTTAGGAAAATTAGGAGCTTGTTGTTTGTTTGTTTGTTTGTTGTAGTCTGCAGAA 1549
Query 1445 ATGTTGTGTATTGAGAAGAAAGC 1467
||||||||||| |||||||||||
Sbjct 1550 ATGTTGTGTATAGAGAAGAAAGC 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5