BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475967
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68480.1 | Symbols: JAG | C2H2 and C2HC zinc fingers superfa... 1932 0.0
> AT1G68480.1 | Symbols: JAG | C2H2 and C2HC zinc fingers superfamily
protein | chr1:25684314-25686165 REVERSE LENGTH=1224
Length=1224
Score = 1932 bits (1046), Expect = 0.0
Identities = 1145/1192 (96%), Gaps = 9/1192 (1%)
Strand=Plus/Plus
Query 1 TTAGTTTCCACACGCagagagagaaacaaagagagagaAGGGAGGGAGGGTTTGTGGCAG 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TTAGTTTCCACACGCAGAGAGAGAAACAAAGAGAGAGATGGGAGGGAGGGTTTGTGGCAG 60
Query 61 ATAAACTGATAGAAAACTTTCGAACCTCTCTTCTTTAACTTTTACTACTCTCTATTCGTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 ATAAACTGATAGAAAACTTTCGAACCTCTCTTCTTTAACTTTTACTACTCTCTATTCG-T 119
Query 121 TTTTCTCTTCCTTTTGTGGTGCCGCCTCCAACTGAAAGTCTTCTAATATTTATTCTCAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 TTTTCTCTTCCTTTTGTGGTGCCGCCTCCAACTGAAAGTCTTCTAATATATATTCTCAAT 179
Query 181 TATTCTAGCTCTCCGGGAGAAGTCTTATCTCACGCCAATCTCTCATTTCCCACTATGAGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TATTCTAGCTCTCCGGGAGAAGTCTTATCTCACGCCAATCTCTCATTTCCCACTATGAGG 239
Query 241 CATGAGGAGAATTACTTAGACCTCAACAATCTTCCGGATGATTTTTCTAAAGATGGCAAT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 CATGAGGAGAATTACTTAGACCTCAACAATCTTCCAGATGATTTTTCTAAAGATGGCAAT 299
Query 301 AAGCAAGCCCTCGAGGAAGGTTCTTCCTCTGGTCTaagaaagaagaaaggaagtaaagaa 360
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 300 AAGCAAGCCCTCGAGGAAGGTTCTTCCTCTGGTCAAAGAAAGAAGAAAGGGAGTAAAGAA 359
Query 361 gggaaagaTGAGAGTGGGAAGGTGTACGAATGTCGATTTTGTTCACTCAAGTTCTGTAAA 420
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 360 GGGAAAGATGAGAGTGGGAAAGTGTACGAATGTCGATTTTGTTCACTCAAGTTCTGCAAA 419
Query 421 TCCCAAGCTCTTGGTGGCCACATGAATCGCCACCGACAAGAGAGGGAGACCGAGACATTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCCCAAGCTCTTGGTGGCCACATGAATCGCCACCGACAAGAGAGGGAGACCGAGACATTG 479
Query 481 AATCAAGCTCGTCAATTGGTCTACCGTAACGATACCTTAACCCCACCTGGAATTTCTCCT 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 AATCAAGCTCGTCAATTGGTCTACCGTAACGATACCATAACCCCACCTGGAATTTCTCCT 539
Query 541 TTCGGTTATCATCATACCACGGATCCAACAATATACCGGTCGGTTTACTCATCACCAATG 600
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTCGGCTATCATCATACCACAGATCCAACAATATACCGGTCGGTTTACTCATCACCAATG 599
Query 601 CTATACCCTGGAAGCTCTTCAACAAACTTGGTTCCGCAACCGCCGATGCCACCACCGCCG 660
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 600 ATATATCCTGGAAGCTCTTCAACGAACTTGGTTCCGCAACCGCCGATGCCACCACCACCG 659
Query 661 CCGCCATATCCATACTCTTCAAACCAATACTCTCCTCACAACCACTTCAACGACTACTAC 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCTCCATATCCATACTCTTCAAACCAATACTCTCCTCACAACCACTTCAACGACTACTAC 719
Query 721 TTAAACCCATCTTTTAGAGGCAGCAGAAGCATCTCTCCAAACCCTAACCTCCCCACCACC 780
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 TTAAACCCATCTTTTAGAGGCAGCAGAAGCATCTCTCCAAGTCCTAACCTCCCCACCACC 779
Query 781 ACAACCGTTGATTACATGGCCGATAGTCCCGTGGAACCGAGCTACACTTGTGTTGGTGCA 840
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 ACCACCGTTGATTACATGGCCGATAGTCCCGTGGAACCGGGCTACACTTGTGTTGGTGCA 839
Query 841 CCCATTGGTCCGATCGGTTTCCCTATCCGTGGCTCAAGCAGCGTCCGTGCGCCCCTTGAA 900
||||||||||||| ||||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct 840 CCCATTGGTCCGACCGGTTTCCCTATCCGTGGCCCAAGCATCGTCCGTGCGCCGCTTGAA 899
Query 901 CCACCACAAGGTCGTGATGGTGACGCTTCACGGCAGCGTTTGGATCACTCTCTTAGGCTC 960
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 900 CCACCACAAGGTCGTGATGGTGACGCTTCACGACAGCGTTTGGATCACTCTCTTAGGTTC 959
Query 961 CCCATCAATCGGTTTCAAGATCATCACTCGCTCTGAGTTTTAATAGATTCCCT-CTGCGt 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| || | || |
Sbjct 960 CCCATCAATCGGTTTCAAGATCATCACTCGCTCTGAGTTTTAATAGATTCTCTAC-GCTT 1018
Query 1020 ttcttttattttattttt--gttttttt--gggtattttcttgttctcttgttttgtaat 1075
||||||| |||| ||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 1019 TTCTTTTCTTTTCTTTTTTTGTTTTTTTTTGGGTATTTTCTTGTCCTCTTGTTTTGTAAC 1078
Query 1076 tttgttgGTTCTATGTAAAAGCAGGGATCTAGAATTGTCTAAACGACATGGATCCTACAT 1135
|||||||||||||| |||||| || |||||||||||||||||||| || | |||||||||
Sbjct 1079 TTTGTTGGTTCTATCTAAAAGTAGAGATCTAGAATTGTCTAAACGCCAAG-ATCCTACAT 1137
Query 1136 GTGTTATTATCATAATGACATGTTTGTGttttttttATTGGTCTAGTCGAAT 1187
||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1138 GTGTTATTATCATAATGACATGTTTGT-TGGTTTTTATTGGTCTAGTCGAAT 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58282832745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5