BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475970
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68510.1 | Symbols: LBD42 | LOB domain-containing protein 42... 1380 0.0
> AT1G68510.1 | Symbols: LBD42 | LOB domain-containing protein
42 | chr1:25706882-25708255 FORWARD LENGTH=1104
Length=1104
Score = 1380 bits (747), Expect = 0.0
Identities = 819/855 (96%), Gaps = 0/855 (0%)
Strand=Plus/Plus
Query 1 CAAAAGTTGAAAAAGACCAGCTCATTCACTTATGACTCATGAGTAACTTCTTCCTTATAA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAAAGTTGAAAAATACCAGCTCATTCACTTATGACTCATGAGTAACTTCTTCCTTATAA 60
Query 61 ATTCAAATTGTTCACAACTCCCTTGAGTTCCATTTCCGAACACAAACACACATAATACGT 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 ATTCAAATTGTTCACAACTTCCTTGAGTTCCATTTCCGAACACAAACACACATCATACGT 120
Query 121 ATATATGTCACTACTAAACATATAAAGGGATATGAGAATCAGCTGCAATGGATGTAGAGT 180
|||| |||||||| |||||||||||||| ||||||||||||||||||| || ||||| ||
Sbjct 121 ATATTTGTCACTAATAAACATATAAAGGAATATGAGAATCAGCTGCAACGGGTGTAGGGT 180
Query 181 GCTACGCAAAGGTTGCAACCAAGATTGCACCATAAGACCATGCCTTCAATGGATCAAATC 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 TCTACGCAAAGGTTGCAACCAAGATTGCACCATTCGACCATGCCTTCAATGGATCAAATC 240
Query 241 CGCAGACTCTCAAGCCAATGCCACACTCTTCCTCGCCAAGTTCTATGGTCGAGCCGGTCT 300
||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||
Sbjct 241 CGCAGACTCTCAAGCCAATGCTACACTCTTCCTTGCTAAGTTCTACGGTCGAGCCGGTCT 300
Query 301 TCTCAACCTCATCGAATCCGGTCCTGACCACCTTCGCCCCGCAATATTTAGGTCACTTCT 360
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 301 TCTTAACCTCATCGAATCCGGTCCTGATCACCTTCGTCCCGCAATATTTAGGTCACTTCT 360
Query 361 GTACGAGGCTTGTGGTCGGATCGTGAACCCTGTAGATGGTTCGGTTGGTTTGATGTGGTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTACGAGGCTTGTGGTCGGATCGTGAACCCTGTAGATGGTTCGGTTGGTTTGATGTGGTC 420
Query 421 AGGGAACTGGTCTCAGTGCCAAGCAGCTGTTGACGCCGTGCTCAACGGCTTACCCATAAC 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGGAACTGGGCTCAGTGCCAAGCAGCTGTTGACGCCGTGCTCAACGGCTTACCCATAAC 480
Query 481 TCACACATCTCTTCCAAGTGCATCCGCGTCGCACCAGATCATTCCTCCTCACAGGACTTA 540
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 TCACACACCTCTTCCAAGTGCATCCGCGTCGCACCAGATCATTCCTCCCCACAGGACTTA 540
Query 541 CGATATACGCCACGTGGCTAAAGATCCAACAACCGGCGGCGACAGTTCTGAGAATCTAGC 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 541 CGATATACGCCACGTGGCTAAAGATCCAACAACCGGCGGCGACAGTTCGGAGAATCTGGC 600
Query 601 CACACGTGTAAACGCTAACAAGAGCAAGACACAAACTGGCCGATTCAAACGTGAATCTGT 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 601 CACACGTGTAAACGCTAACAAGAGCAAGACGCAAACTGGCCGATTCAAACGTGAATCCGT 660
Query 661 GAACCAACAAGGTGAATGTAGTCATGACATGTGGCAACTCCAAAGTTCTAGTGCTGCGCA 720
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 661 GAACCAACTAGGTGAATGTAGTCATGACATGTGGCAACTCCCAAGTTCTAGTGCTACGCA 720
Query 721 TGGCTATGGTCACTTCACGTTGGAGACTGTAGAGAGCGGAAGGGAAGCTCCATTAAATCA 780
||| ||||| |||||||||||||||| ||| |||||| |||||||||||||||| |||||
Sbjct 721 TGGTTATGGCCACTTCACGTTGGAGAATGTGGAGAGCCGAAGGGAAGCTCCATTTAATCA 780
Query 781 AAGTTCTTCAAATCTTGGGTTTGATGATCAAGTCGATATCAACGAGGTTGGCTTAGAGCT 840
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGTTCTCCAAATCTTGGGTTTGATGATCAAGTCGATATCAACGAGGTTGGCTTAGAGCT 840
Query 841 CAGACTTGGTTAGAA 855
|||||||||||||||
Sbjct 841 CAGACTTGGTTAGAA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5