BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475974
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68540.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1574 0.0
> AT1G68540.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:25720026-25721410 FORWARD LENGTH=1134
Length=1134
Score = 1574 bits (852), Expect = 0.0
Identities = 976/1036 (94%), Gaps = 8/1036 (1%)
Strand=Plus/Plus
Query 1 AAACATGTCTGAGTATTTGGTAACTGGAGGAACTGGTTTCATTGCTTCTTACATCATCAA 60
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 37 AAAGATGTCTGAGTATTTGGTAACTGGAGGAACAGGTTTCATTGCTTCTTACATCATCAA 96
Query 61 ATCACTTCTCGAACTCGGACACACCGTTCGAACCACTGTCCGAAACCCTCGTGATGAAGA 120
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 97 ATCACTTCTCGAACTCGGACACACCGTTCGAACAACTGTCCGAAACCCACGTGATGAAGA 156
Query 121 AAAGGTTGGTTTTTTATGGGAATTTCAAGGAGCAAAACAGAGGTTGAAGATTCTCCAAGC 180
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 157 AAAGGTTGGATTTTTATGGGAATTTCAAGGAGCAAAACAGAGGCTAAAGATTCTCCAAGC 216
Query 181 TGATCTAACGGTTGAAGGAAGTTTTGATGAAGCAGTGAACGGTGTTGATGGAGTTTTCCA 240
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 217 TGATCTAACGGTAGAAGGAAGTTTTGATGAAGCAGTGAATGGTGTTGATGGAGTATTCCA 276
Query 241 CACAGCTTCTCCTGTTCTTGTTCCACAGGATCATAACATTCAAGAGACTTTGGTTGATCC 300
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 277 CACTGCTTCTCCTGTTCTTGTTCCACAGGATCATAACATTCAGGAGACTTTGGTTGATCC 336
Query 301 AATTATAAAAGGAACAACCAATGTGATGAGCTCTTGTGCTAAGTCCAAA-ACA-AGTCTC 358
|||||||| || ||||| |||||||||||||||||||| ||||| ||| || | | |
Sbjct 337 TATTATAAAGGGTACAACAAATGTGATGAGCTCTTGTGCCAAGTCTAAAGCCACA-T-TG 394
Query 359 AAAAGGATTGTTCTTACGTCTTCTTGTTCTTCGATACGGTACCGTTTCGATGCCACGGAA 418
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct 395 AAAAGGATTGTTCTTACGTCTTCTTGCTCTTCGATACGCTACCGTTTCGATGCAACTGAA 454
Query 419 GCTTCTCCTCTCAATGAGTCTCATTGGAGTGATCCTGAATACTGCAAACGTTTCAATCTT 478
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 455 GCTTCTCCTCTCAATGAGTCTCATTGGAGTGATCCTGAATATTGCAAACGTTTCAATCTT 514
Query 479 TGGTATGGATATGCAAAGACTCTAGGTGAGAAAGA-A-GCATGGAGGATAGCTGAAGAGA 536
||||||||||||||||||||| || | |||||||| | || |||||||||||||||||||
Sbjct 515 TGGTATGGATATGCAAAGACTTTA-G-GAGAAAGAGAGGCTTGGAGGATAGCTGAAGAGA 572
Query 537 AAGGATTAGATTTGGTGGTTGTGAATCCTTCATTTGTGGTTGGTCCATTGCTTGGACCAA 596
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 573 AAGGATTAGACTTGGTTGTTGTGAATCCTTCGTTTGTGGTTGGTCCATTGCTTGGACCAA 632
Query 597 AACCAACAAGTACTCTACTTATGATTCTCGCCATTGCCAAAGGTCTCGCTGGAGAGTATC 656
|||||||||||||||| ||||||||||| || ||||| |||||||| |||||||||||||
Sbjct 633 AACCAACAAGTACTCTGCTTATGATTCTTGCTATTGCTAAAGGTCTTGCTGGAGAGTATC 692
Query 657 CGAATTTTACGGTAGGGTTTGTGCATATAGATGATGTTGTTGCTGCACATGTATTGGCTA 716
| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CAAATTTCACTGTCGGGTTTGTGCATATAGATGATGTTGTTGCTGCACATGTATTGGCTA 752
Query 717 TGGAAGAGCCTAAAGCATCAGGGAGAATCATATGTTCGAGTTCGGTTGCTCATTGGTCTG 776
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 753 TGGAAGAGCCTAAAGCATCAGGGAGAATCATATGTTCGAGTTCTGTTGCTCATTGGTCTG 812
Query 777 AGATCATTGAGTTGATGAGAAACAAGTATCCTAATTACCCATTTGAGAACAAGTGTAGTA 836
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 813 AGATCATTGAGTTGATGAGAAATAAGTATCCTAATTACCCATTTGAGAACAAGTGTAGTA 872
Query 837 ACAAAGAAGGGGACAATAGTCCACATAGCATGGACACAAGGAAGATACATGAGTTGGGAT 896
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 873 ACAAAGAAGGAGACAATAGTCCACATAGTATGGATACAAGGAAGATACATGAGTTGGGAT 932
Query 897 TTGGTTCCTTCAAGTCACTACCTGAGATGTTTGATGACTGCATCATCAGTTTTCAGAAGA 956
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 933 TTGGATCCTTCAAGTCACTACCTGAGATGTTTGATGATTGCATCATCAGTTTTCAGAAGA 992
Query 957 AGGGTCTGCTCTAAATATACACATTTTCATACATCGTATTGTCGATTTATGGATCGATGT 1016
||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |
Sbjct 993 AGGGTCTGCTCTAAATATATACATTTTCATACATCGAATTGTCGATTAATGGATCGATTT 1052
Query 1017 CAATGGATTGAACTCT 1032
||||| |||| |||||
Sbjct 1053 CAATGTATTGGACTCT 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5