BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475977 Length=1761 Score E Sequences producing significant alignments: (Bits) Value AT1G68552.1 | Symbols: CPuORF53 | conserved peptide upstream op... 1513 0.0 AT1G68550.1 | Symbols: | Integrase-type DNA-binding superfamil... 1513 0.0 > AT1G68552.1 | Symbols: CPuORF53 | conserved peptide upstream open reading frame 53 | chr1:25725455-25727701 REVERSE LENGTH=1830 Length=1830 Score = 1513 bits (819), Expect = 0.0 Identities = 1197/1364 (88%), Gaps = 88/1364 (6%) Strand=Plus/Plus Query 452 ATGGTTGAGGTTAGAAAAGAACAGTCTTTGAGTGGTACTAGTAGCGAGATTAAGAAGAGA 511 ||||||| | ||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 501 ATGGTTGCGATTAGAAAGGAACAGTCTTTGAGTGGTGTTAGTAGCGAGATTAAGAAGAGA 560 Query 512 GCTAAGAGAAACACTGTATCATCGTCCCTTCCTCAAGAAACCCAACCTTTGAGAAAAGTC 571 |||||||||||||| | | ||||||||||||||||||||||||||||||||| |||||| Sbjct 561 GCTAAGAGAAACAC--TCT-ATCGTCCCTTCCTCAAGAAACCCAACCTTTGAGGAAAGTC 617 Query 572 CGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTT 631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 CGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTT 677 Query 632 AAGGTTTCTAAGGTTCGGAGAATGAAACGTATCGTTCGTGAGATTAACTTTCAATCTATG 691 |||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||| Sbjct 678 AAGGTTCCTAAGCCAAGGAAAATGAAACGTATCGTTCGTGAGATTAACTTTCCTTCTATG 737 Query 692 GAAGTTTCAGAGCAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGTTAGTAAG 751 |||||||| || |||||||||||||||||||||||||||||||||||||||| | | ||| Sbjct 738 GAAGTTTCTGAACAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGATGGCAAG 797 Query 752 AAAGCTGTGTCTGCTTCTCCTGCTTG-TCCTGGGTTGTTGACTAAGAAGCCTGTTGGTGT 810 | ||||||||| ||||||||||| || ||| | | | ||||||||||||||||| Sbjct 798 ATAGCTGTGTCAGCTTCTCCTGC-TGTTCC----TAG--G---AAGAAGCCTGTTGGTGT 847 Query 811 TAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGACATCCTATTAAGAAAACTAG 870 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 848 TAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGAGATCCTATTAAGAAAACTAG 907 Query 871 GACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAA 930 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 908 GACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAA 967 Query 931 GATTGAGTTTGATGCACTTGTTGCTTCTCTCTCTGTTTCTGGAAATGTGTCGACTA--AA 988 | |||||||||||| | | ||| | || ||||||||||||| |||| || Sbjct 968 GCTTGAGTTTGATG--C-TATTG--------T-TG---CTGGAAATGTGTCCACTACTAA 1012 Query 989 AC-TGTTGTTTCTTCATCTGAGACTAGTCAATGCTCTCGTTCTTCACCTGTTGTTCCTGT 1047 || || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1013 ACGTGATGTTTCTTCATCTGAGACTAGCCAATGCTCTCGTTCTTCACCTGTTGTTCCTGT 1072 Query 1048 TGAGCAAGATGACACTTCAGCTTCAGCTCTCACTTGTGT---CAACCCTGATGATGTCT- 1103 |||||||||||||||||| || ||||||||||||||||| |||||||||||| |||| Sbjct 1073 TGAGCAAGATGACACTTCTGCATCAGCTCTCACTTGTGTCAACAACCCTGATGACGTCTC 1132 Query 1104 ---C--TG-T-----TGCTCCGACTCCAAATGCTCCTGCTGGTGGAAACAAGGAAGTGTT 1152 | || | |||||| |||||||||| |||||||||||||||||||||| ||| Sbjct 1133 GACCGTTGCTCCAACTGCTCCAACTCCAAATGTTCCTGCTGGTGGAAACAAGGAAACGTT 1192 Query 1153 GTTCGATTTCGACTTTACTGATCTACAAATCCCTGATCTTGGTTTCTTTGCAGAGGAGCA 1212 ||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||| Sbjct 1193 GTTCGATTTCGACTTTACTAATCTACAGATCCCTGATTTTGGTTTCTTGGCAGAGGAGCA 1252 Query 1213 ACATGATCTAGACTTCGATTGTTTCCTCTCGGATGATCAGTTTGATGATTTCGGTTTGCT 1272 ||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1253 ACAAGACCTAGACTTCGATTGTTTCCTCGCGGATGATCAGTTTGATGATTTCGGCTTGCT 1312 Query 1273 TGATGACATTCAAGGATTCGAAGACAATGGTCCAAGCGAATTACCGGATTTCGACTTTGC 1332 |||||||||||||||||||||||| || |||||||| | ||||| |||||||||||||| Sbjct 1313 TGATGACATTCAAGGATTCGAAGATAACGGTCCAAGTGCGTTACCAGATTTCGACTTTGC 1372 Query 1333 GGATGTTGAAGAGCTCCAACTAGCTGACTCTAGTTTCGGTTTCCTTGATCAACTTGCCCC 1392 |||||||||||| || || |||||||||||||||||||||||||||||||||||||| || Sbjct 1373 GGATGTTGAAGATCTTCAGCTAGCTGACTCTAGTTTCGGTTTCCTTGATCAACTTGCTCC 1432 Query 1393 TCTCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCATAGGATTTTCCTTA--A-TG 1449 | |||||||||||||||||||||||||||||||||||||||||||| || |||| | || Sbjct 1433 TATCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCATAGGATCTTGCTTAGTAATG 1492 Query 1450 TTTAAGTGAGAAGAGTGtttt-tttACTTCGTTTATG-TTATAGTGTATTCAAGACATAC 1507 || |||||||||||||||||| ||| |||||||||| || |||| ||| ||||||||| Sbjct 1493 TT-AAGTGAGAAGAGTGTTTTGTTTT-TTCGTTTATGCTT-TAGTA-ATTTAAGACATAC 1548 Query 1508 AAAACTGTGTGTTCCGGA--GTAGCAAGTTCTTAAGACATAAAGCCGGGTTTTGCAATTA 1565 |||| ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| Sbjct 1549 AAAAGTGTGTGTTCCGGATTGTAGTAAGATCTTAAGACATAAAGCCGGGTTTTGCAATTA 1608 Query 1566 GGAGTTGAGTTTTTATCAAGTTTTAATTTATATT-GAATGATGTTTTGCTGAGTCTGGTT 1624 ||| | ||||||| || |||||||| ||||| || || |||||||||||||| ||||||| Sbjct 1609 GGAATCGAGTTTTAATGAAGTTTTAGTTTATGTTTGATTGATGTTTTGCTGATTCTGGTT 1668 Query 1625 TCT-TT-TA----ACTTTGGGtttttttCTTTGTGCTTT-AAGAGCCGTCCAAAGTGAAA 1677 ||| || | ||||||||||||| | ||||||||| |||||||||||||||||||| Sbjct 1669 TCTCTTCTCTTTTACTTTGGGTTTTT--CATTGTGCTTTTAAGAGCCGTCCAAAGTGAAA 1726 Query 1678 GAG----G-TCAG--TT-----GT-A-TT--A---CATCATTCTCCACTTTCATTTTTTG 1718 ||| | | || || || | || | ||||||||||||||||||| ||| | Sbjct 1727 GAGTTTTGATGAGAATTCCACTGTCAGTTTTATTACATCATTCTCCACTTTCATCTTTCG 1786 Query 1719 TTAATGTTAAAA-CAAAATATTAATGGAAGAAGTTTTTTAATTT 1761 ||||||| |||| |||||||||||||||||||| |||||| ||| Sbjct 1787 TTAATGTGAAAAACAAAATATTAATGGAAGAAGCTTTTTAGTTT 1830 Score = 532 bits (288), Expect = 3e-150 Identities = 353/381 (93%), Gaps = 18/381 (5%) Strand=Plus/Plus Query 84 GTGAAAAGGTTCGGTTTTTAGGGTTTTCGATCTGAAATATCAACAAGAAAAAAGGCGTTT 143 ||| ||||||||||||||| ||| ||||||||||| | ||||||||||||||||| |||| Sbjct 81 GTG-AAAGGTTCGGTTTTTTGGG-TTTCGATCTGATA-ATCAACAAGAAAAAAGG-GTTT 136 Query 144 GATTTATGTCGGCTGGGTTTGAATCGACTGTGATTTTGTCTTTGATTCATATCTCTTCTC 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 GATTTATGTCGGCTGGGTTTGAATCGACTGTGATTTTGTCTTTGATTCATATCTCTTCTC 196 Query 204 CGA--T--T--TCA---T---CATCATCGTCTTCTTTGAAATCTGGTCTTCTCAACGCTC 251 ||| | | ||| | |||||||||| |||||||||||| ||||||||||||||| Sbjct 197 CGATTTCATCATCATCTTCCCCATCATCGTCGTCTTTGAAATCTTGTCTTCTCAACGCTC 256 Query 252 TTCACTTCTGCTTTATTAAGCAGAGGCTTGTTCTTGAGACTCCTTCTCTTTCCATGCGCT 311 |||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 257 TTCACTTCTGCTGTAATAAGCAGAGGCTTGTTCTGGAGACTCCTTCTCTTTCCATGCGCT 316 Query 312 TAAGACCCAAAAGGACTTGTTCTAGTGTTGAAGTCTTTGGGGGTTTTCACATAAAGCAGC 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 TAAGACCCAAAAGGACTTGTTCTAGTGTTGAAGTCTTTGGGGGTTTTCACATAAAGCAGC 376 Query 372 AAAAATTTTCTTTTTTCATAGTTCGCTGAGAGTTTTGAGTTCTTGGTAC-AAAAAAGTTT 430 |||| |||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| Sbjct 377 AAAAGTTTTCTTTTTTCATAGTTCGCTGAGAGTTTTGAGTT-TTGATACCAAAAAAGTTT 435 Query 431 TGACCTTTGAGAGTGATTTTT 451 |||||||| |||||||||||| Sbjct 436 TGACCTTTTAGAGTGATTTTT 456 > AT1G68550.1 | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:25725455-25727701 REVERSE LENGTH=1830 Length=1830 Score = 1513 bits (819), Expect = 0.0 Identities = 1197/1364 (88%), Gaps = 88/1364 (6%) Strand=Plus/Plus Query 452 ATGGTTGAGGTTAGAAAAGAACAGTCTTTGAGTGGTACTAGTAGCGAGATTAAGAAGAGA 511 ||||||| | ||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 501 ATGGTTGCGATTAGAAAGGAACAGTCTTTGAGTGGTGTTAGTAGCGAGATTAAGAAGAGA 560 Query 512 GCTAAGAGAAACACTGTATCATCGTCCCTTCCTCAAGAAACCCAACCTTTGAGAAAAGTC 571 |||||||||||||| | | ||||||||||||||||||||||||||||||||| |||||| Sbjct 561 GCTAAGAGAAACAC--TCT-ATCGTCCCTTCCTCAAGAAACCCAACCTTTGAGGAAAGTC 617 Query 572 CGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTT 631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 CGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTT 677 Query 632 AAGGTTTCTAAGGTTCGGAGAATGAAACGTATCGTTCGTGAGATTAACTTTCAATCTATG 691 |||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||| Sbjct 678 AAGGTTCCTAAGCCAAGGAAAATGAAACGTATCGTTCGTGAGATTAACTTTCCTTCTATG 737 Query 692 GAAGTTTCAGAGCAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGTTAGTAAG 751 |||||||| || |||||||||||||||||||||||||||||||||||||||| | | ||| Sbjct 738 GAAGTTTCTGAACAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGATGGCAAG 797 Query 752 AAAGCTGTGTCTGCTTCTCCTGCTTG-TCCTGGGTTGTTGACTAAGAAGCCTGTTGGTGT 810 | ||||||||| ||||||||||| || ||| | | | ||||||||||||||||| Sbjct 798 ATAGCTGTGTCAGCTTCTCCTGC-TGTTCC----TAG--G---AAGAAGCCTGTTGGTGT 847 Query 811 TAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGACATCCTATTAAGAAAACTAG 870 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 848 TAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGAGATCCTATTAAGAAAACTAG 907 Query 871 GACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAA 930 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 908 GACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAA 967 Query 931 GATTGAGTTTGATGCACTTGTTGCTTCTCTCTCTGTTTCTGGAAATGTGTCGACTA--AA 988 | |||||||||||| | | ||| | || ||||||||||||| |||| || Sbjct 968 GCTTGAGTTTGATG--C-TATTG--------T-TG---CTGGAAATGTGTCCACTACTAA 1012 Query 989 AC-TGTTGTTTCTTCATCTGAGACTAGTCAATGCTCTCGTTCTTCACCTGTTGTTCCTGT 1047 || || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1013 ACGTGATGTTTCTTCATCTGAGACTAGCCAATGCTCTCGTTCTTCACCTGTTGTTCCTGT 1072 Query 1048 TGAGCAAGATGACACTTCAGCTTCAGCTCTCACTTGTGT---CAACCCTGATGATGTCT- 1103 |||||||||||||||||| || ||||||||||||||||| |||||||||||| |||| Sbjct 1073 TGAGCAAGATGACACTTCTGCATCAGCTCTCACTTGTGTCAACAACCCTGATGACGTCTC 1132 Query 1104 ---C--TG-T-----TGCTCCGACTCCAAATGCTCCTGCTGGTGGAAACAAGGAAGTGTT 1152 | || | |||||| |||||||||| |||||||||||||||||||||| ||| Sbjct 1133 GACCGTTGCTCCAACTGCTCCAACTCCAAATGTTCCTGCTGGTGGAAACAAGGAAACGTT 1192 Query 1153 GTTCGATTTCGACTTTACTGATCTACAAATCCCTGATCTTGGTTTCTTTGCAGAGGAGCA 1212 ||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||| Sbjct 1193 GTTCGATTTCGACTTTACTAATCTACAGATCCCTGATTTTGGTTTCTTGGCAGAGGAGCA 1252 Query 1213 ACATGATCTAGACTTCGATTGTTTCCTCTCGGATGATCAGTTTGATGATTTCGGTTTGCT 1272 ||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1253 ACAAGACCTAGACTTCGATTGTTTCCTCGCGGATGATCAGTTTGATGATTTCGGCTTGCT 1312 Query 1273 TGATGACATTCAAGGATTCGAAGACAATGGTCCAAGCGAATTACCGGATTTCGACTTTGC 1332 |||||||||||||||||||||||| || |||||||| | ||||| |||||||||||||| Sbjct 1313 TGATGACATTCAAGGATTCGAAGATAACGGTCCAAGTGCGTTACCAGATTTCGACTTTGC 1372 Query 1333 GGATGTTGAAGAGCTCCAACTAGCTGACTCTAGTTTCGGTTTCCTTGATCAACTTGCCCC 1392 |||||||||||| || || |||||||||||||||||||||||||||||||||||||| || Sbjct 1373 GGATGTTGAAGATCTTCAGCTAGCTGACTCTAGTTTCGGTTTCCTTGATCAACTTGCTCC 1432 Query 1393 TCTCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCATAGGATTTTCCTTA--A-TG 1449 | |||||||||||||||||||||||||||||||||||||||||||| || |||| | || Sbjct 1433 TATCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCATAGGATCTTGCTTAGTAATG 1492 Query 1450 TTTAAGTGAGAAGAGTGtttt-tttACTTCGTTTATG-TTATAGTGTATTCAAGACATAC 1507 || |||||||||||||||||| ||| |||||||||| || |||| ||| ||||||||| Sbjct 1493 TT-AAGTGAGAAGAGTGTTTTGTTTT-TTCGTTTATGCTT-TAGTA-ATTTAAGACATAC 1548 Query 1508 AAAACTGTGTGTTCCGGA--GTAGCAAGTTCTTAAGACATAAAGCCGGGTTTTGCAATTA 1565 |||| ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| Sbjct 1549 AAAAGTGTGTGTTCCGGATTGTAGTAAGATCTTAAGACATAAAGCCGGGTTTTGCAATTA 1608 Query 1566 GGAGTTGAGTTTTTATCAAGTTTTAATTTATATT-GAATGATGTTTTGCTGAGTCTGGTT 1624 ||| | ||||||| || |||||||| ||||| || || |||||||||||||| ||||||| Sbjct 1609 GGAATCGAGTTTTAATGAAGTTTTAGTTTATGTTTGATTGATGTTTTGCTGATTCTGGTT 1668 Query 1625 TCT-TT-TA----ACTTTGGGtttttttCTTTGTGCTTT-AAGAGCCGTCCAAAGTGAAA 1677 ||| || | ||||||||||||| | ||||||||| |||||||||||||||||||| Sbjct 1669 TCTCTTCTCTTTTACTTTGGGTTTTT--CATTGTGCTTTTAAGAGCCGTCCAAAGTGAAA 1726 Query 1678 GAG----G-TCAG--TT-----GT-A-TT--A---CATCATTCTCCACTTTCATTTTTTG 1718 ||| | | || || || | || | ||||||||||||||||||| ||| | Sbjct 1727 GAGTTTTGATGAGAATTCCACTGTCAGTTTTATTACATCATTCTCCACTTTCATCTTTCG 1786 Query 1719 TTAATGTTAAAA-CAAAATATTAATGGAAGAAGTTTTTTAATTT 1761 ||||||| |||| |||||||||||||||||||| |||||| ||| Sbjct 1787 TTAATGTGAAAAACAAAATATTAATGGAAGAAGCTTTTTAGTTT 1830 Score = 532 bits (288), Expect = 3e-150 Identities = 353/381 (93%), Gaps = 18/381 (5%) Strand=Plus/Plus Query 84 GTGAAAAGGTTCGGTTTTTAGGGTTTTCGATCTGAAATATCAACAAGAAAAAAGGCGTTT 143 ||| ||||||||||||||| ||| ||||||||||| | ||||||||||||||||| |||| Sbjct 81 GTG-AAAGGTTCGGTTTTTTGGG-TTTCGATCTGATA-ATCAACAAGAAAAAAGG-GTTT 136 Query 144 GATTTATGTCGGCTGGGTTTGAATCGACTGTGATTTTGTCTTTGATTCATATCTCTTCTC 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 GATTTATGTCGGCTGGGTTTGAATCGACTGTGATTTTGTCTTTGATTCATATCTCTTCTC 196 Query 204 CGA--T--T--TCA---T---CATCATCGTCTTCTTTGAAATCTGGTCTTCTCAACGCTC 251 ||| | | ||| | |||||||||| |||||||||||| ||||||||||||||| Sbjct 197 CGATTTCATCATCATCTTCCCCATCATCGTCGTCTTTGAAATCTTGTCTTCTCAACGCTC 256 Query 252 TTCACTTCTGCTTTATTAAGCAGAGGCTTGTTCTTGAGACTCCTTCTCTTTCCATGCGCT 311 |||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 257 TTCACTTCTGCTGTAATAAGCAGAGGCTTGTTCTGGAGACTCCTTCTCTTTCCATGCGCT 316 Query 312 TAAGACCCAAAAGGACTTGTTCTAGTGTTGAAGTCTTTGGGGGTTTTCACATAAAGCAGC 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 TAAGACCCAAAAGGACTTGTTCTAGTGTTGAAGTCTTTGGGGGTTTTCACATAAAGCAGC 376 Query 372 AAAAATTTTCTTTTTTCATAGTTCGCTGAGAGTTTTGAGTTCTTGGTAC-AAAAAAGTTT 430 |||| |||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| Sbjct 377 AAAAGTTTTCTTTTTTCATAGTTCGCTGAGAGTTTTGAGTT-TTGATACCAAAAAAGTTT 435 Query 431 TGACCTTTGAGAGTGATTTTT 451 |||||||| |||||||||||| Sbjct 436 TGACCTTTTAGAGTGATTTTT 456 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87097945575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5