BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475977
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68552.1 | Symbols: CPuORF53 | conserved peptide upstream op... 1513 0.0
AT1G68550.1 | Symbols: | Integrase-type DNA-binding superfamil... 1513 0.0
> AT1G68552.1 | Symbols: CPuORF53 | conserved peptide upstream
open reading frame 53 | chr1:25725455-25727701 REVERSE LENGTH=1830
Length=1830
Score = 1513 bits (819), Expect = 0.0
Identities = 1197/1364 (88%), Gaps = 88/1364 (6%)
Strand=Plus/Plus
Query 452 ATGGTTGAGGTTAGAAAAGAACAGTCTTTGAGTGGTACTAGTAGCGAGATTAAGAAGAGA 511
||||||| | ||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 501 ATGGTTGCGATTAGAAAGGAACAGTCTTTGAGTGGTGTTAGTAGCGAGATTAAGAAGAGA 560
Query 512 GCTAAGAGAAACACTGTATCATCGTCCCTTCCTCAAGAAACCCAACCTTTGAGAAAAGTC 571
|||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 561 GCTAAGAGAAACAC--TCT-ATCGTCCCTTCCTCAAGAAACCCAACCTTTGAGGAAAGTC 617
Query 572 CGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTT 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTT 677
Query 632 AAGGTTTCTAAGGTTCGGAGAATGAAACGTATCGTTCGTGAGATTAACTTTCAATCTATG 691
|||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 678 AAGGTTCCTAAGCCAAGGAAAATGAAACGTATCGTTCGTGAGATTAACTTTCCTTCTATG 737
Query 692 GAAGTTTCAGAGCAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGTTAGTAAG 751
|||||||| || |||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 738 GAAGTTTCTGAACAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGATGGCAAG 797
Query 752 AAAGCTGTGTCTGCTTCTCCTGCTTG-TCCTGGGTTGTTGACTAAGAAGCCTGTTGGTGT 810
| ||||||||| ||||||||||| || ||| | | | |||||||||||||||||
Sbjct 798 ATAGCTGTGTCAGCTTCTCCTGC-TGTTCC----TAG--G---AAGAAGCCTGTTGGTGT 847
Query 811 TAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGACATCCTATTAAGAAAACTAG 870
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 848 TAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGAGATCCTATTAAGAAAACTAG 907
Query 871 GACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAA 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAA 967
Query 931 GATTGAGTTTGATGCACTTGTTGCTTCTCTCTCTGTTTCTGGAAATGTGTCGACTA--AA 988
| |||||||||||| | | ||| | || ||||||||||||| |||| ||
Sbjct 968 GCTTGAGTTTGATG--C-TATTG--------T-TG---CTGGAAATGTGTCCACTACTAA 1012
Query 989 AC-TGTTGTTTCTTCATCTGAGACTAGTCAATGCTCTCGTTCTTCACCTGTTGTTCCTGT 1047
|| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1013 ACGTGATGTTTCTTCATCTGAGACTAGCCAATGCTCTCGTTCTTCACCTGTTGTTCCTGT 1072
Query 1048 TGAGCAAGATGACACTTCAGCTTCAGCTCTCACTTGTGT---CAACCCTGATGATGTCT- 1103
|||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||
Sbjct 1073 TGAGCAAGATGACACTTCTGCATCAGCTCTCACTTGTGTCAACAACCCTGATGACGTCTC 1132
Query 1104 ---C--TG-T-----TGCTCCGACTCCAAATGCTCCTGCTGGTGGAAACAAGGAAGTGTT 1152
| || | |||||| |||||||||| |||||||||||||||||||||| |||
Sbjct 1133 GACCGTTGCTCCAACTGCTCCAACTCCAAATGTTCCTGCTGGTGGAAACAAGGAAACGTT 1192
Query 1153 GTTCGATTTCGACTTTACTGATCTACAAATCCCTGATCTTGGTTTCTTTGCAGAGGAGCA 1212
||||||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||
Sbjct 1193 GTTCGATTTCGACTTTACTAATCTACAGATCCCTGATTTTGGTTTCTTGGCAGAGGAGCA 1252
Query 1213 ACATGATCTAGACTTCGATTGTTTCCTCTCGGATGATCAGTTTGATGATTTCGGTTTGCT 1272
||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1253 ACAAGACCTAGACTTCGATTGTTTCCTCGCGGATGATCAGTTTGATGATTTCGGCTTGCT 1312
Query 1273 TGATGACATTCAAGGATTCGAAGACAATGGTCCAAGCGAATTACCGGATTTCGACTTTGC 1332
|||||||||||||||||||||||| || |||||||| | ||||| ||||||||||||||
Sbjct 1313 TGATGACATTCAAGGATTCGAAGATAACGGTCCAAGTGCGTTACCAGATTTCGACTTTGC 1372
Query 1333 GGATGTTGAAGAGCTCCAACTAGCTGACTCTAGTTTCGGTTTCCTTGATCAACTTGCCCC 1392
|||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1373 GGATGTTGAAGATCTTCAGCTAGCTGACTCTAGTTTCGGTTTCCTTGATCAACTTGCTCC 1432
Query 1393 TCTCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCATAGGATTTTCCTTA--A-TG 1449
| |||||||||||||||||||||||||||||||||||||||||||| || |||| | ||
Sbjct 1433 TATCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCATAGGATCTTGCTTAGTAATG 1492
Query 1450 TTTAAGTGAGAAGAGTGtttt-tttACTTCGTTTATG-TTATAGTGTATTCAAGACATAC 1507
|| |||||||||||||||||| ||| |||||||||| || |||| ||| |||||||||
Sbjct 1493 TT-AAGTGAGAAGAGTGTTTTGTTTT-TTCGTTTATGCTT-TAGTA-ATTTAAGACATAC 1548
Query 1508 AAAACTGTGTGTTCCGGA--GTAGCAAGTTCTTAAGACATAAAGCCGGGTTTTGCAATTA 1565
|||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 1549 AAAAGTGTGTGTTCCGGATTGTAGTAAGATCTTAAGACATAAAGCCGGGTTTTGCAATTA 1608
Query 1566 GGAGTTGAGTTTTTATCAAGTTTTAATTTATATT-GAATGATGTTTTGCTGAGTCTGGTT 1624
||| | ||||||| || |||||||| ||||| || || |||||||||||||| |||||||
Sbjct 1609 GGAATCGAGTTTTAATGAAGTTTTAGTTTATGTTTGATTGATGTTTTGCTGATTCTGGTT 1668
Query 1625 TCT-TT-TA----ACTTTGGGtttttttCTTTGTGCTTT-AAGAGCCGTCCAAAGTGAAA 1677
||| || | ||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 1669 TCTCTTCTCTTTTACTTTGGGTTTTT--CATTGTGCTTTTAAGAGCCGTCCAAAGTGAAA 1726
Query 1678 GAG----G-TCAG--TT-----GT-A-TT--A---CATCATTCTCCACTTTCATTTTTTG 1718
||| | | || || || | || | ||||||||||||||||||| ||| |
Sbjct 1727 GAGTTTTGATGAGAATTCCACTGTCAGTTTTATTACATCATTCTCCACTTTCATCTTTCG 1786
Query 1719 TTAATGTTAAAA-CAAAATATTAATGGAAGAAGTTTTTTAATTT 1761
||||||| |||| |||||||||||||||||||| |||||| |||
Sbjct 1787 TTAATGTGAAAAACAAAATATTAATGGAAGAAGCTTTTTAGTTT 1830
Score = 532 bits (288), Expect = 3e-150
Identities = 353/381 (93%), Gaps = 18/381 (5%)
Strand=Plus/Plus
Query 84 GTGAAAAGGTTCGGTTTTTAGGGTTTTCGATCTGAAATATCAACAAGAAAAAAGGCGTTT 143
||| ||||||||||||||| ||| ||||||||||| | ||||||||||||||||| ||||
Sbjct 81 GTG-AAAGGTTCGGTTTTTTGGG-TTTCGATCTGATA-ATCAACAAGAAAAAAGG-GTTT 136
Query 144 GATTTATGTCGGCTGGGTTTGAATCGACTGTGATTTTGTCTTTGATTCATATCTCTTCTC 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GATTTATGTCGGCTGGGTTTGAATCGACTGTGATTTTGTCTTTGATTCATATCTCTTCTC 196
Query 204 CGA--T--T--TCA---T---CATCATCGTCTTCTTTGAAATCTGGTCTTCTCAACGCTC 251
||| | | ||| | |||||||||| |||||||||||| |||||||||||||||
Sbjct 197 CGATTTCATCATCATCTTCCCCATCATCGTCGTCTTTGAAATCTTGTCTTCTCAACGCTC 256
Query 252 TTCACTTCTGCTTTATTAAGCAGAGGCTTGTTCTTGAGACTCCTTCTCTTTCCATGCGCT 311
|||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 257 TTCACTTCTGCTGTAATAAGCAGAGGCTTGTTCTGGAGACTCCTTCTCTTTCCATGCGCT 316
Query 312 TAAGACCCAAAAGGACTTGTTCTAGTGTTGAAGTCTTTGGGGGTTTTCACATAAAGCAGC 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TAAGACCCAAAAGGACTTGTTCTAGTGTTGAAGTCTTTGGGGGTTTTCACATAAAGCAGC 376
Query 372 AAAAATTTTCTTTTTTCATAGTTCGCTGAGAGTTTTGAGTTCTTGGTAC-AAAAAAGTTT 430
|||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 377 AAAAGTTTTCTTTTTTCATAGTTCGCTGAGAGTTTTGAGTT-TTGATACCAAAAAAGTTT 435
Query 431 TGACCTTTGAGAGTGATTTTT 451
|||||||| ||||||||||||
Sbjct 436 TGACCTTTTAGAGTGATTTTT 456
> AT1G68550.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:25725455-25727701 REVERSE LENGTH=1830
Length=1830
Score = 1513 bits (819), Expect = 0.0
Identities = 1197/1364 (88%), Gaps = 88/1364 (6%)
Strand=Plus/Plus
Query 452 ATGGTTGAGGTTAGAAAAGAACAGTCTTTGAGTGGTACTAGTAGCGAGATTAAGAAGAGA 511
||||||| | ||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 501 ATGGTTGCGATTAGAAAGGAACAGTCTTTGAGTGGTGTTAGTAGCGAGATTAAGAAGAGA 560
Query 512 GCTAAGAGAAACACTGTATCATCGTCCCTTCCTCAAGAAACCCAACCTTTGAGAAAAGTC 571
|||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 561 GCTAAGAGAAACAC--TCT-ATCGTCCCTTCCTCAAGAAACCCAACCTTTGAGGAAAGTC 617
Query 572 CGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTT 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTT 677
Query 632 AAGGTTTCTAAGGTTCGGAGAATGAAACGTATCGTTCGTGAGATTAACTTTCAATCTATG 691
|||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 678 AAGGTTCCTAAGCCAAGGAAAATGAAACGTATCGTTCGTGAGATTAACTTTCCTTCTATG 737
Query 692 GAAGTTTCAGAGCAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGTTAGTAAG 751
|||||||| || |||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 738 GAAGTTTCTGAACAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGATGGCAAG 797
Query 752 AAAGCTGTGTCTGCTTCTCCTGCTTG-TCCTGGGTTGTTGACTAAGAAGCCTGTTGGTGT 810
| ||||||||| ||||||||||| || ||| | | | |||||||||||||||||
Sbjct 798 ATAGCTGTGTCAGCTTCTCCTGC-TGTTCC----TAG--G---AAGAAGCCTGTTGGTGT 847
Query 811 TAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGACATCCTATTAAGAAAACTAG 870
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 848 TAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGAGATCCTATTAAGAAAACTAG 907
Query 871 GACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAA 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAA 967
Query 931 GATTGAGTTTGATGCACTTGTTGCTTCTCTCTCTGTTTCTGGAAATGTGTCGACTA--AA 988
| |||||||||||| | | ||| | || ||||||||||||| |||| ||
Sbjct 968 GCTTGAGTTTGATG--C-TATTG--------T-TG---CTGGAAATGTGTCCACTACTAA 1012
Query 989 AC-TGTTGTTTCTTCATCTGAGACTAGTCAATGCTCTCGTTCTTCACCTGTTGTTCCTGT 1047
|| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1013 ACGTGATGTTTCTTCATCTGAGACTAGCCAATGCTCTCGTTCTTCACCTGTTGTTCCTGT 1072
Query 1048 TGAGCAAGATGACACTTCAGCTTCAGCTCTCACTTGTGT---CAACCCTGATGATGTCT- 1103
|||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||
Sbjct 1073 TGAGCAAGATGACACTTCTGCATCAGCTCTCACTTGTGTCAACAACCCTGATGACGTCTC 1132
Query 1104 ---C--TG-T-----TGCTCCGACTCCAAATGCTCCTGCTGGTGGAAACAAGGAAGTGTT 1152
| || | |||||| |||||||||| |||||||||||||||||||||| |||
Sbjct 1133 GACCGTTGCTCCAACTGCTCCAACTCCAAATGTTCCTGCTGGTGGAAACAAGGAAACGTT 1192
Query 1153 GTTCGATTTCGACTTTACTGATCTACAAATCCCTGATCTTGGTTTCTTTGCAGAGGAGCA 1212
||||||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||
Sbjct 1193 GTTCGATTTCGACTTTACTAATCTACAGATCCCTGATTTTGGTTTCTTGGCAGAGGAGCA 1252
Query 1213 ACATGATCTAGACTTCGATTGTTTCCTCTCGGATGATCAGTTTGATGATTTCGGTTTGCT 1272
||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1253 ACAAGACCTAGACTTCGATTGTTTCCTCGCGGATGATCAGTTTGATGATTTCGGCTTGCT 1312
Query 1273 TGATGACATTCAAGGATTCGAAGACAATGGTCCAAGCGAATTACCGGATTTCGACTTTGC 1332
|||||||||||||||||||||||| || |||||||| | ||||| ||||||||||||||
Sbjct 1313 TGATGACATTCAAGGATTCGAAGATAACGGTCCAAGTGCGTTACCAGATTTCGACTTTGC 1372
Query 1333 GGATGTTGAAGAGCTCCAACTAGCTGACTCTAGTTTCGGTTTCCTTGATCAACTTGCCCC 1392
|||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1373 GGATGTTGAAGATCTTCAGCTAGCTGACTCTAGTTTCGGTTTCCTTGATCAACTTGCTCC 1432
Query 1393 TCTCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCATAGGATTTTCCTTA--A-TG 1449
| |||||||||||||||||||||||||||||||||||||||||||| || |||| | ||
Sbjct 1433 TATCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCATAGGATCTTGCTTAGTAATG 1492
Query 1450 TTTAAGTGAGAAGAGTGtttt-tttACTTCGTTTATG-TTATAGTGTATTCAAGACATAC 1507
|| |||||||||||||||||| ||| |||||||||| || |||| ||| |||||||||
Sbjct 1493 TT-AAGTGAGAAGAGTGTTTTGTTTT-TTCGTTTATGCTT-TAGTA-ATTTAAGACATAC 1548
Query 1508 AAAACTGTGTGTTCCGGA--GTAGCAAGTTCTTAAGACATAAAGCCGGGTTTTGCAATTA 1565
|||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 1549 AAAAGTGTGTGTTCCGGATTGTAGTAAGATCTTAAGACATAAAGCCGGGTTTTGCAATTA 1608
Query 1566 GGAGTTGAGTTTTTATCAAGTTTTAATTTATATT-GAATGATGTTTTGCTGAGTCTGGTT 1624
||| | ||||||| || |||||||| ||||| || || |||||||||||||| |||||||
Sbjct 1609 GGAATCGAGTTTTAATGAAGTTTTAGTTTATGTTTGATTGATGTTTTGCTGATTCTGGTT 1668
Query 1625 TCT-TT-TA----ACTTTGGGtttttttCTTTGTGCTTT-AAGAGCCGTCCAAAGTGAAA 1677
||| || | ||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 1669 TCTCTTCTCTTTTACTTTGGGTTTTT--CATTGTGCTTTTAAGAGCCGTCCAAAGTGAAA 1726
Query 1678 GAG----G-TCAG--TT-----GT-A-TT--A---CATCATTCTCCACTTTCATTTTTTG 1718
||| | | || || || | || | ||||||||||||||||||| ||| |
Sbjct 1727 GAGTTTTGATGAGAATTCCACTGTCAGTTTTATTACATCATTCTCCACTTTCATCTTTCG 1786
Query 1719 TTAATGTTAAAA-CAAAATATTAATGGAAGAAGTTTTTTAATTT 1761
||||||| |||| |||||||||||||||||||| |||||| |||
Sbjct 1787 TTAATGTGAAAAACAAAATATTAATGGAAGAAGCTTTTTAGTTT 1830
Score = 532 bits (288), Expect = 3e-150
Identities = 353/381 (93%), Gaps = 18/381 (5%)
Strand=Plus/Plus
Query 84 GTGAAAAGGTTCGGTTTTTAGGGTTTTCGATCTGAAATATCAACAAGAAAAAAGGCGTTT 143
||| ||||||||||||||| ||| ||||||||||| | ||||||||||||||||| ||||
Sbjct 81 GTG-AAAGGTTCGGTTTTTTGGG-TTTCGATCTGATA-ATCAACAAGAAAAAAGG-GTTT 136
Query 144 GATTTATGTCGGCTGGGTTTGAATCGACTGTGATTTTGTCTTTGATTCATATCTCTTCTC 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GATTTATGTCGGCTGGGTTTGAATCGACTGTGATTTTGTCTTTGATTCATATCTCTTCTC 196
Query 204 CGA--T--T--TCA---T---CATCATCGTCTTCTTTGAAATCTGGTCTTCTCAACGCTC 251
||| | | ||| | |||||||||| |||||||||||| |||||||||||||||
Sbjct 197 CGATTTCATCATCATCTTCCCCATCATCGTCGTCTTTGAAATCTTGTCTTCTCAACGCTC 256
Query 252 TTCACTTCTGCTTTATTAAGCAGAGGCTTGTTCTTGAGACTCCTTCTCTTTCCATGCGCT 311
|||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 257 TTCACTTCTGCTGTAATAAGCAGAGGCTTGTTCTGGAGACTCCTTCTCTTTCCATGCGCT 316
Query 312 TAAGACCCAAAAGGACTTGTTCTAGTGTTGAAGTCTTTGGGGGTTTTCACATAAAGCAGC 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TAAGACCCAAAAGGACTTGTTCTAGTGTTGAAGTCTTTGGGGGTTTTCACATAAAGCAGC 376
Query 372 AAAAATTTTCTTTTTTCATAGTTCGCTGAGAGTTTTGAGTTCTTGGTAC-AAAAAAGTTT 430
|||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 377 AAAAGTTTTCTTTTTTCATAGTTCGCTGAGAGTTTTGAGTT-TTGATACCAAAAAAGTTT 435
Query 431 TGACCTTTGAGAGTGATTTTT 451
|||||||| ||||||||||||
Sbjct 436 TGACCTTTTAGAGTGATTTTT 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5