BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475979
Length=2000
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68570.1 | Symbols: | Major facilitator superfamily protein... 3175 0.0
AT1G68568.1 | Symbols: | other RNA | chr1:25746977-25747654 RE... 388 8e-107
> AT1G68570.1 | Symbols: | Major facilitator superfamily protein
| chr1:25746736-25750275 FORWARD LENGTH=2031
Length=2031
Score = 3175 bits (1719), Expect = 0.0
Identities = 1910/2002 (95%), Gaps = 14/2002 (1%)
Strand=Plus/Plus
Query 1 CAACACTTACAAGTTTTACAACAAACTTAATATATAAAACATAACTAATTATTACAAGAA 60
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1 CAACACTTACAAGTTTTACAACAAACGTAATATATAAAACATTACTAATTATTACAAGAA 60
Query 61 ACACTCAGAAACATCATGGAAGAGCAAAGCAAGAACAAGATCAGTGAAGAAGAAAAACAA 120
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAATCAGAAACATCATGGAGGAGCAAAGCAAGAACAAGATCAGTGAAGAAGAAAAACAA 120
Query 121 CTTCATGGGAGACCAAATCGACCAAAGGGAGGATTAATTACCATGCCCTTCATCTTCGGT 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 CTCCATGGGAGACCAAATCGACCAAAGGGAGGATTAATTACCATGCCCTTCATCTTC-G- 178
Query 181 ATGAACGAGATATGTGAAAAATTAGCGGTGGTTGGGTTTCACGCAAACATGATAAGTTAC 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 -CGAACGAGATATGTGAAAAATTAGCGGTGGTGGGGTTTCACGCAAACATGATAAGTTAC 237
Query 241 TTAACAACACAGCTTCACCTTCCCTTAACCAAAGCAGCCAACACTCTCACAAACTTCGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTAACAACACAGCTTCACCTTCCCTTAACCAAAGCAGCCAACACTCTCACAAACTTCGCC 297
Query 301 GGAACTTCGAGTCTCACTCCTCTCCTTGGTGCCTTTATCGCCGACTCTTTCGCCGGCCGG 360
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGGACATCGAGTCTTACTCCTCTCCTTGGTGCCTTTATCGCCGACTCTTTCGCCGGCCGA 357
Query 361 TTCTGGACCATCACGTTTGCTTCCATCATCTACCAAGTCGGGATGACTTTGCTTACGATA 420
|| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 358 TTTTGGACCATCACTTTTGCTTCCATCATCTACCAAATCGGGATGACGTTGCTTACGATA 417
Query 421 TCGGCAATAATACCAACGTTAAGGCCACCACCATGTAAAGGAGAAGAGGTTTGTGTAGTA 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCGGCAATAATACCAACGCTAAGGCCACCACCATGTAAAGGAGAAGAGGTTTGTGTAGTA 477
Query 481 GCTGACACAGCACAATTGAGTATA-TTATACGTAGCTCTTCTTCTTGGAGCTCTCGGGTC 539
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 478 GCTGACACAGCACAATTGAGTATACTT-TACGTAGCTCTTCTTCTTGGAGCTCTCGGGTC 536
Query 540 GGGTGGGATCCGGCCATGTGTTGTTGCTTTTGGTGCTGATCAGTTCGACGAGTCGGATCC 599
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGGTGGGATCCGACCATGTGTTGTTGCTTTTGGTGCTGATCAGTTCGACGAGTCGGATCC 596
Query 600 TAATCAAACCACCAAAACTTGGAACTACTTCAACTGGTACTACTTTTGCATGGGAGCAGC 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 597 TAATCAAACCACCAAAACTTGGAACTACTTCAACTGGTACTACTTTTGCATGGGTGCAGC 656
Query 660 AGTTTTACTAGCGGTGACGGTTCTTGTGTGGATCCAAGATAACGTTGGGTGGGGTCTAGG 719
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGTTTTACTGGCGGTGACGGTTCTTGTGTGGATCCAAGATAACGTTGGGTGGGGTCTAGG 716
Query 720 TTTAGGCATCCCGACAGTAGCTATGTTCTTATCCGTTATTGCTTTTGTCGGCGGTTTCCA 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 TTTAGGCATTCCGACAGTAGCTATGTTCTTATCCGTTATTGCTTTTGTCGGCGGTTTTCA 776
Query 780 GCTTTATCGTCACTTGGATCCTGCGGGTAGTCCATTTACCCGCTTGATCCAAGTGGGAGT 839
||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACTTTACCGTCACTTGGTTCCCGCGGGTAGTCCATTTACCCGCTTGATCCAAGTGGGAGT 836
Query 840 CGCGGCGTTTCGTAAAAGGAAACTGAGGATGGTTTCTGATCCTTCTCTTCTCTATTTCAA 899
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 837 CGCGGCATTTCGCAAAAGGAAACTGAGGATGGTTTCTGATCCCTCTCTTCTCTATTTTAA 896
Query 900 CGATGAGATTGATGCTCCTATCTCCTTAGGTGGTAAACTTACCCACACCAAACACATGAG 959
||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 897 CGACGAGATTGATGCACCTATCTCCTTAGGTGGTAAACTCACCCACACCAAACACATGAG 956
Query 960 TTTCTTGGACAAGGCGGCAATAGTAACGGAGCAAGACAATTTGAAACCGGGCCAAATCCC 1019
||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||
Sbjct 957 TTTCTTGGACAAGGCGGCAATAGTAACGGAGGAAGACAATTTAAAACCGGGTCAAATCCC 1016
Query 1020 CAACCATTGGAGGCTAAGCACAGTCCACCGGGTCGAAGAACTCAAATCGGTGATCCGAAT 1079
|||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||
Sbjct 1017 AAACCATTGGAGGCTAAGCACAGTCCATCGAGTCGAAGAACTCAAATCCGTCATCCGAAT 1076
Query 1080 GGGTCCAATCGGAGCCTCCGGGATTCTCCTAATCACAGCCTATGCTCAACAAGGAACCTT 1139
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GGGTCCAATCGGAGCATCCGGGATTCTCCTAATCACAGCCTATGCTCAACAAGGAACCTT 1136
Query 1140 CTCACTACAACAAGCCAAAACCATGAACCGTCATCTAACAAACTCCTTCCAAATCCCAGC 1199
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1137 CTCATTACAACAAGCCAAAACCATGAACCGTCACCTAACAAACTCCTTCCAAATCCCAGC 1196
Query 1200 CGGTTCAATGTCAGTCTTCACAACCATCGCAATGCTTACCACAATCGTCTTTTACGACCG 1259
|||||||||||| |||||||||||| |||| ||||||||||||||| |||| ||||||||
Sbjct 1197 CGGTTCAATGTCCGTCTTCACAACCGTCGCTATGCTTACCACAATCATCTTCTACGACCG 1256
Query 1260 CATTTTCGTCAAAGTCGCTCGCAAATTCACCGGACTCGAAAGAGGCATCACGTTCCTTCA 1319
| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1257 CGTCTTCGTCAAAGTCGCTCGCAAATTCACCGGTCTCGAAAGAGGCATCACGTTCCTCCA 1316
Query 1320 CCGTATGGGAATCGGATTCGTAATCTCGATAATCGCCACGCTAGTCGCCGGATTCGTCGA 1379
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1317 CCGTATGGGAATCGGATTCGTAATCTCGATAATCGCCACGTTAGTTGCCGGATTCGTCGA 1376
Query 1380 AATCAAGCGAAAAAGCGTCGCGATTGAGCACGGTCTCCTCGATAAACCTCACACGATTGT 1439
| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGTAAAGCGAAAGAGCGTCGCGATTGAGCACGGTCTCCTCGATAAACCTCACACGATTGT 1436
Query 1440 TCCAATCTCGTTTCTTTGGTTGATTCCTCAGTACGGTCTCCATGGAGTCGCCGAAGCTTT 1499
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 1437 TCCAATCTCGTTTCTTTGGTTGATTCCTCAATATGGTCTCCATGGAGTCGCTGAAGCTTT 1496
Query 1500 CATGTCGATCGGACATTTAGAGTTCTTCTACGATCAGGTGCCGGAGAGTATGAGGAGCAC 1559
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1497 CATGTCCATCGGACATTTAGAGTTCTTCTACGATCAGGCACCGGAGAGTATGAGGAGCAC 1556
Query 1560 GGCGACGGCGCTTTTTTGGATGGCGATTTCGATCGGAAACTATGTGAGCACTTTGCTAGT 1619
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1557 GGCAACGGCGCTTTTTTGGATGGCGATTTCGATCGGAAACTATGTGAGCACTTTGCTGGT 1616
Query 1620 GACTTTGGTTCATAAATTCAGTGCTAAACCGGATGGGAGCAATTGGTTACCGGATAACAA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GACTTTGGTTCATAAATTCAGTGCTAAACCGGATGGGAGCAATTGGTTACCGGATAACAA 1676
Query 1680 TTTGAACCGAGGGAGGCTTGAGTATTTTTACTGGTTGATTACAGTATTACAAGCTGTTAA 1739
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1677 TTTGAACCGAGGGAGGCTTGAGTATTTTTACTGGTTGATTACTGTGTTACAAGCTGTTAA 1736
Query 1740 TCTTGTGTATTATCTATGGTGCGCCAAGATTTACACGTATAAACCGGTTCAGGTGCATCA 1799
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1737 TCTTGTGTATTATCTATGGTGCGCCAAGATTTATACGTATAAACCGGTTCAGGTTCATCA 1796
Query 1800 TAGCAAGGAAGAGAGTAGTCCGGTTAAGGAGGAATTGCAGTTGTCCAATAGGAGTTTAGT 1859
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1797 TAGCAAGGAAGATAGTAGTCCGGTTAAGGAGGAATTGCAGTTGTCAAATAGGAGTTTAGT 1856
Query 1860 TGATGCATGAGTCTTGG-GTTGGGTGTGTAATGTAAAATTACTAAATTAGTATAGTTGTA 1918
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1857 TGATGAATGAGTCTTGGCGTTGGATGTGTAATGTAAAATTACTAAATTAGTATAGTTGTA 1916
Query 1919 ATATGTATTTATCAATCTATATATATAATAAATTAGAAAGAATGACTTTGTCCATTGTTG 1978
||||||| ||||||||| | ||| | | | | ||||||||||||||||||||||||||
Sbjct 1917 ATATGTACTTATCAATCCA-ATA-A-A-T---T-AGAAAGAATGACTTTGTCCATTGTTG 1968
Query 1979 TGGGTTTTCAATACGGATAAAC 2000
||||| ||||||| |||||||
Sbjct 1969 TGGGTGTTCAATATTGATAAAC 1990
> AT1G68568.1 | Symbols: | other RNA | chr1:25746977-25747654
REVERSE LENGTH=510
Length=510
Score = 388 bits (210), Expect = 8e-107
Identities = 219/223 (98%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 417 GATATCGGCAATAATACCAACGTTAAGGCCACCACCATGTAAAGGAGAAGAGGTTTGTGT 476
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 272 GATATCGGCAATAATACCAACGCTAAGGCCACCACCATGTAAAGGAGAAGAGGTTTGTGT 213
Query 477 AGTAGCTGACACAGCACAATTGAGTATA-TTATACGTAGCTCTTCTTCTTGGAGCTCTCG 535
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 212 AGTAGCTGACACAGCACAATTGAGTATACTT-TACGTAGCTCTTCTTCTTGGAGCTCTCG 154
Query 536 GGTCGGGTGGGATCCGGCCATGTGTTGTTGCTTTTGGTGCTGATCAGTTCGACGAGTCGG 595
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 GGTCGGGTGGGATCCGACCATGTGTTGTTGCTTTTGGTGCTGATCAGTTCGACGAGTCGG 94
Query 596 ATCCTAATCAAACCACCAAAACTTGGAACTACTTCAACTGGTA 638
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 ATCCTAATCAAACCACCAAAACTTGGAACTACTTCAACTGGTA 51
Score = 344 bits (186), Expect = 2e-93
Identities = 200/207 (97%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 183 GAACGAGATATGTGAAAAATTAGCGGTGGTTGGGTTTCACGCAAACATGATAAGTTACTT 242
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 GAACGAGATATGTGAAAAATTAGCGGTGGTGGGGTTTCACGCAAACATGATAAGTTACTT 420
Query 243 AACAACACAGCTTCACCTTCCCTTAACCAAAGCAGCCAACACTCTCACAAACTTCGCCGG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AACAACACAGCTTCACCTTCCCTTAACCAAAGCAGCCAACACTCTCACAAACTTCGCCGG 360
Query 303 AACTTCGAGTCTCACTCCTCTCCTTGGTGCCTTTATCGCCGACTCTTTCGCCGGCCGGTT 362
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 GACATCGAGTCTTACTCCTCTCCTTGGTGCCTTTATCGCCGACTCTTTCGCCGGCCGATT 300
Query 363 CTGGACCATCACGTTTGCTTCCATCAT 389
||||||||||| ||||||||||||||
Sbjct 299 TTGGACCATCACTTTTGCTTCCATCAT 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99095875830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5