BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475982
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68580.2 | Symbols: | agenet domain-containing protein / br... 3362 0.0
> AT1G68580.2 | Symbols: | agenet domain-containing protein /
bromo-adjacent homology (BAH) domain-containing protein | chr1:25752735-25756076
FORWARD LENGTH=2526
Length=2526
Score = 3362 bits (1820), Expect = 0.0
Identities = 2162/2322 (93%), Gaps = 44/2322 (2%)
Strand=Plus/Plus
Query 54 CAAGAGCTCAAATTAGGtttttttttCTTCCTCCGATTTGAGAGATTCGA-T---AATGG 109
||||||||||||||||| || || || |||||||||||||| || | | |||||
Sbjct 86 CAAGAGCTCAAATTAGG---GTTATT-TT--TCCGATTTGAGAGA-TCCATTAACAATGG 138
Query 110 CGTGGTCGTCGGAAACGCCGTCGTATTGCGGTTGGAATGAGCTACATGTGAAGAACACGA 169
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 139 CGTGGTCGTCGGAAACGCCGTCGTATTGCGGCTGGAATGAGCGACATGTGAAGAACACGA 198
Query 170 AAGGAAAGATGGAGGTTCATTATTATCTTGAGAGGAAAGATGGAATTGCAGATCTAGCTG 229
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 199 AAGAAAAGATGGAGGTTCATTATTATCTCGAGAGGAAAGATGGAATTGCAGATCTAGCTG 258
Query 230 TTATTGGGAGGTTGAAGAATTCTTCTAAACGCATGTCTTTTAGATACGCTTTGAAGAAGA 289
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 259 TTATTGGGAGGTTGAAGAA---TTCTAAACGCATGTCTTTTAGATACGCTTTGAAGAAGA 315
Query 290 ATCGCTCTGTTTTGAAAAAGCTTAATTCCAAAGATGATGTTTCGAATTGGCTCGATTCTA 349
|||||||||| ||||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct 316 ATCGCTCTGTCTTGAAAAAGCTTAATTCTAAAGATGATGTTGCGCTTTGGCTCGATTCTA 375
Query 350 TTGTTTCTGGTGTGATGCCTCATGTAGCAGATGTACCAGCTACTGTTATGACTGAAAAGG 409
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 376 TTGTTTCTGGTGAGATACCTCATGTAGCAGATGTACCAGCTACTGTTATGACTGAAAAAG 435
Query 410 ATGCTGGAGGGTTAAATATGAGCACTTTTTTGAATGGGAAATTTAAGGAGCCTATTCAGC 469
||||||||||||| ||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 436 ATGCTGGAGGGTTCAATATGAGCACTTTTATGAATAGGAAATTTCAGGAGCCTATTCAGC 495
Query 470 AGACCAAAACGTTCTCCTGGATGGGTTCTTCTTGGACTTGTAGGAAACGGCGTAAGCATT 529
||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||
Sbjct 496 AGATCAAAACGTTCTCTTGGATGGGTTTTTCTTGGACTTGCAGGAAACGGCGTAAGCATT 555
Query 530 ATCAATCTTTTCTCCGGAATGGTGTTAGAATATCTGTGAATGATTTTGTGTATGTTTTAG 589
|||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 556 ATCAGTCTTATCTCCGGAATGGTGTCAGAATATCTGTGAATGATTTTGTGTATGTTTTAG 615
Query 590 CGGAGCAAAATAAGAGACTTGTTGCATATTTGGAAGACCTTTATGAGGATTCTAAAGGGA 649
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 616 CGGAGCAACATAAGAGACTTGTTGCATATATAGAAGACCTTTATGAGGATTCTAAAGGCA 675
Query 650 AGAAGATGGTTGTGGTACGATGGTTTCACAAAACTGAGGAGGTTGGTTCTGTTTTACCTG 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 676 AGAAGATGGTTGTGGTACGATGGTTTCACAAAACTGAGGAGGTTGGTTCTGTTTTATCTG 735
Query 710 ATGAT-ATTAATGACAGAGAGAT-TTTCTTTTCTCTTTATCGTCAAGATATCAGCATTGA 767
||||| | ||||||||||||||| ||| ||||||||| |||| ||||||||||| |||||
Sbjct 736 ATGATGA-TAATGACAGAGAGATATTT-TTTTCTCTTAATCGGCAAGATATCAGTATTGA 793
Query 768 GTGCATAGATTATTTGGCTACTGTCCTCAGTCCTCAGCATTATGAGAAATTTCTTAAGGT 827
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 794 GTGCATAGATTACTTGGCTACTGTCCTTAGTCCTCAGCATTATGAGAAATTTCTTAAGGT 853
Query 828 GCTAATGCATGTTCAGCCAGTAGCTTTCTTCTGCCAGAAATTATATGGAGATGATGGCAT 887
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 854 GCCGATGCATGTTCAGACAGTAGCTTTCTTCTGCCAGAAATTATATGGAGATGATGGTTT 913
Query 888 AAAGCCCTATGACATTACACAATTAGAAGGTTACTGGAAACAAGAAATGCTTAGATACTT 947
|||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 914 AAAGCCGTATGACATTACACAACTAGAAGGTTACTGGAGACAAGAAATGCTTAGATACTT 973
Query 948 GAATGTATCCGTTTTAAAATCAGGTGAAGGTGCTCAAGCACCTGGTACTGACCCAGGATT 1007
||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 974 GAATGTATCTATTTTAAAATCATTTGAAGGTGCTCAAGCCCCTGGTACTGACCCAGGATT 1033
Query 1008 AGGAGCTCCATTGGTTGGTTGTGTTGGGATTAGATCAAGGAAAAGGCGTCGTCCTAGTCC 1067
| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1034 AAAAGCTCCATTGGTTGGTTGTGTTGGGATTAGATCAAGGAAAAGACGCCGTCCTAGTCC 1093
Query 1068 TGTTGGTACTTTGAATCTACCATCCGCAGGTGACATGAAAGGTGACTGCAAATCTAGTCC 1127
|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1094 TGTTGGTACTTTGAATGTATCATACGCAGGTGACATGAAAGGTGACTGCAAATCTAGTCC 1153
Query 1128 AGATTCTGTTTTGGGTGCTT-CAGATGCTTCTATGTGT-AAGGGTGCA-GAAGATGGTTC 1184
|||||||||||||| || || ||||||||||||| | | ||||||| | |||||||||||
Sbjct 1154 AGATTCTGTTTTGGCTG-TTACAGATGCTTCTATAT-TCAAGGGTG-ACGAAGATGGTTC 1210
Query 1185 TTCCCATCACATTAAAAAGGGTTCACTTGTTGAAGTTCTTTCTGAAGATAGTGGCATCAG 1244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1211 TTCCCATCACATTAAAAAGGGTTCACTTATTGAAGTTCTTTCTGAAGATAGTGGCATCAG 1270
Query 1245 AGGTTGTTGGTTTAAGGCACTGATATTAAAGAAACACAAAGATAAGGTTAAGGTCCAGTA 1304
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1271 AGGTTGTTGGTTTAAGGCTCTGGTATTAAAGAAACACAAAGATAAGGTTAAGGTCCAGTA 1330
Query 1305 CCAAGATATTCAGGATGCAGATGATGAATCTAAAAAGCTAGAGGAGTGGATTTTGACATC 1364
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1331 CCAAGATATTCAGGATGCAGACGATGAATCTAAAAAGCTAGAGGAATGGATTTTGACATC 1390
Query 1365 TCGGGTTGCTGGTGGTGATGATCCGGTTGG-TCTTAGAATCAAAGGACGGAAAGTAGTAC 1423
||||||||||| ||||||| ||| || || ||||||||||||||||||||||||||||
Sbjct 1391 TCGGGTTGCTGCTGGTGATCATCTGG-GGGATCTTAGAATCAAAGGACGGAAAGTAGTAA 1449
Query 1424 GACCAATGCTGAAGCCCGGCAAAGAAAATGATGTATGTGTCATCGGGGTTGGTATGCCtg 1483
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 GACCAATGCTGAAGCCCAGCAAAGAAAATGATGTATGTGTCATCGGGGTTGGTATGCCTG 1509
Query 1484 tggatgtgtggtggtgtgatgggtggtgggaagggatcgtggtgCAGAAAGTTTCTGAAG 1543
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1510 TGGATGTGTGGTGGTGTGATGGATGGTGGGAAGGGATCGTGGTGCAGGAAGTTTCTGAAG 1569
Query 1544 AGAAATTTGAAGTTTACTTGCCAGGTGAAAAGAAAATGTCTGCCTTCCATCGTAGCGACC 1603
||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct 1570 AGAAATTTGAAGTTTACTTGCCAGGCGAAAAGAAAATGTCTGCTTTCCATCGTAATGACC 1629
Query 1604 TTAGACAATCTCGGGAATGGTTGGATGATGAGTGGCTAAATATAAGATCAAGATCTGATA 1663
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1630 TCAGACAATCTCGGGAATGGTTGGATGATGAGTGGCTAAACATAAGATCAAGATCTGATA 1689
Query 1664 TTGTGAGTTCTGTCCTGTCTTTGATAAAGAAAGAAGAGGCGGAGGTGAAACATGATGAGA 1723
|||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||
Sbjct 1690 TTGTGAGTTCTGTCCTATCTTTGACGAAGAAAAAAGAGATGGAGGTGAAACATGATGAGA 1749
Query 1724 AGCCATCTGATGTTGGGGTTTGTAATGGT-GTGATGTCAGCC-AAGGGTGAGGCTAAACG 1781
|| | ||||||||||| |||||||||||| | ||||||| || ||| ||||||||||||
Sbjct 1750 AGTCGTCTGATGTTGGTGTTTGTAATGGTAG-GATGTCA-CCAAAGACTGAGGCTAAACG 1807
Query 1782 TACCATCTCTCTTCCAGTAGCTACAACCAAAAAGTCATTACCTAAGCGACCAATTCCAGA 1841
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1808 CACCATCTCTCTTCCAGTAGCTACAACCAAAAAGTCACTACCTAAGCGACCAATTCCAGA 1867
Query 1842 TCTTCTAAAAGATGTCCTAGTCACTTCTGACTTAAAGTGGAAAAAATCATCGAGGAAACG 1901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1868 TCTTCTAAAAGATGTCCTAGTCACTTCTGACTTAAAGTGGAAAAAATCATCGAGGAAGCG 1927
Query 1902 CAATCGAGTTGTCAGTTGCTGTCCACACGATCCTAGCTTGAATAATGGTTTCTCTAGTGA 1961
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1928 GAATCGAGTTGTCAGTTGCTGTCCACACGATCCTAGCTTGAATGATGGTTTCTCTAGTGA 1987
Query 1962 AAGATCTTTGGATTGTGAGAACTGTAAGTTCATGGGAGATGA-TTTTGGTTCTTCGGTTG 2020
||||||||||||||||||||||||||||||||||| |||| | |||||| ||||| | ||
Sbjct 1988 AAGATCTTTGGATTGTGAGAACTGTAAGTTCATGGAAGAT-ACTTTTGGCTCTTCAGATG 2046
Query 2021 GGCAGCCTTTGACAGGTCTATTAATGTCGAGATGATCATCAGCTTGGGAA-TAAAGTTGC 2079
| |||| |||||||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct 2047 GACAGCATTTGACAGGTCTATTAATGTCGAGATGATCATCAGCTTGG-ACCTA--GTTAC 2103
Query 2080 GTTTCTTCATGTGAGGTACATATTACC-TGATGGGCATCTGCTCAATGCGATTTTGGGTT 2138
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2104 TTTTCTTCTTGTGAGGTACATATTACCCTGATGGGCATCTGCTCAATGCGATTTTGGGTT 2163
Query 2139 ATA-GATTACTGGTGACTCGCAAGATTT-TGTGGGATGGATGATAGGATTTGCTCGTAAT 2196
|| |||||||||| ||||||||| ||| | |||||||||| |||||||| |||||||||
Sbjct 2164 TTAAGATTACTGGTAACTCGCAAGCTTTCT-TGGGATGGATTATAGGATTAGCTCGTAAT 2222
Query 2197 GGCATCCAAATTCGTTTGTGTACTTATGTTGTAACAGTAGGGCTTAGAGCTTTAATACAA 2256
|||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||
Sbjct 2223 GGCATCCAAATTCGTTTGTGTACTTATGTTGTGACAGTAGGGCATAGTGCTTTAATTCAA 2282
Query 2257 TCAGCAAAATTTTGGATGCAATAGAAATAGGTAATAACAGCATTACCTCGCTAGTGTTTT 2316
|||||||||||||||||||| ||||| |||||||||| | ||||||||||||||||||||
Sbjct 2283 TCAGCAAAATTTTGGATGCAGTAGAAGTAGGTAATAATAACATTACCTCGCTAGTGTTTT 2342
Query 2317 AGGCATTAATCAGTGTTTTATTCTGCTTAGAATTAAGTTATC 2358
|||| |||||||||||||| | || |||||||||||||||||
Sbjct 2343 AGGC-TTAATCAGTGTTTT-T-CT-CTTAGAATTAAGTTATC 2380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117067670940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5