BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475984
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68590.1 | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr1... 1129 0.0
> AT1G68590.1 | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr1:25757404-25758232
REVERSE LENGTH=753
Length=753
Score = 1129 bits (611), Expect = 0.0
Identities = 718/767 (94%), Gaps = 18/767 (2%)
Strand=Plus/Plus
Query 1 TGACCATATCTTTCTTATCCATATTTTCTCACAAAATCTCCATTGCTCTCTGAGATAACA 60
|||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 1 TGACCATATCTTCCTTATCCATA--TTCTCACAAAATCTCCATTGTTCTCTGAGAAAACA 58
Query 61 C-AAAATGATGTCATCAATGGCACTTTCTTCTGCTTCCCTCTGCTCTTCTTTCATCTCTC 119
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 59 CAAAAATGATGTCATCAATGGCACTCTCTTCTACTTCCCTCTGCTCTTCTTTCATCTCTC 118
Query 120 AACATCCCAAGCTATCTATCACTGCTTCTCCTCCATTGTTCCATAACCAAACAACCAAAC 179
||||||| || || || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 119 AACATCCAAAACTCTCCATCACTGCTTCTCCTCCATTGTTCCATACCCAAACAACCAAAC 178
Query 180 CCATCTCTGTAAAACGTAAAATCATAACTCTAGCAGCTCCAGAGACCCTCACGGCTGAAA 239
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 179 CCATCTCTGTAAAACGGAAAATCATAACTCTAGCAGCTCCAGAGACACTCACCGCTGAAA 238
Query 240 CAGTCACCGGAATTGATACTTCCGACAACACTCCACAACAAACAACAAAGGTAGTGAAGC 299
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 239 CAGTCACCGGAATTGATACTTCCGACAACACTCCACAACAAACAATAAAGGTGGTGAAGC 298
Query 300 CAGTTGAGAAGTCAAGAGTGGTTCTCAAGTTTGTGTGGATGGAGAAGAACATAGGATTAG 359
||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 CAGATGAGAAATCAAGAGTGGTACTCAAGTTTGTGTGGATGGAGAAGAACATAGGATTAG 358
Query 360 GATTGGACCAACATGTACCTGGACATGGCACAATACCACTTAGTCCTTACTTCTTCTGGC 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 GATTGGACCAACATGTACCTGGACATGGCACAATCCCACTTAGTCCTTACTTCTTCTGGC 418
Query 420 CAAGGAAAGATGCTTGGGAAGAGCTTAAGTCTACTCTTGAAGCTAAGCCATGGATCTCTC 479
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 419 CTAGGAAAGATGCTTGGGAAGAGCTTAAGTCTACTCTTGAAGCTAAACCATGGATCTCTC 478
Query 480 AGAAGAAGATGATCATTCTTCTTAACCAAGCCACTGACATCATCAATCTCTGGCAACAAA 539
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 479 AGAAGAAGATGATCATTCTTCTAAACCAAGCCACTGATATCATCAATCTCTGGCAACAAA 538
Query 540 GTGGCGGCAATTTAACTTCACAATAATCTCtttttttAATTTCTGCATTTCAAGAATTCA 599
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 539 GTGGCGGCAATTTAACTTCTCAATAATCTCTTTTTTGA-TTTCTGCATTTCAAGAATTCA 597
Query 600 TTCACTTTGTCTATGATAATTATTATTGCTATTGAGAGTTTTT-GTTTATCTAAACAATA 658
| |||||||||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 598 --C--TTTGTCTATGAT--T-ATTATTGCTATTGAGAGTTTTTTGTTTATCTAAACAATA 650
Query 659 TATCCAATCACATTCGACACAAAAGATTTCATTTTATTGCAAAGAGAAA-TGATAATaaa 717
| |||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||
Sbjct 651 T--CCAATCACATTCGACATAAAAGATT-CATTTTATTGGAAAGAGAAAATGATAATAAA 707
Query 718 aagcaaaaaaTCAAGCAATTTTGAGTTGTTGTTTCCTTGAAGGACAT 764
| ||||| | |||||||| | |||||| |||||||||||||||||||
Sbjct 708 A-GCAAACA-TCAAGCAACTCTGAGTTATTGTTTCCTTGAAGGACAT 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37123034633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5