BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475988
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68620.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1565 0.0
> AT1G68620.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:25765947-25767240 FORWARD LENGTH=1294
Length=1294
Score = 1565 bits (847), Expect = 0.0
Identities = 1022/1104 (93%), Gaps = 21/1104 (2%)
Strand=Plus/Plus
Query 1 AAAAGCTCTCTTTGTGGATCACGAAAC--TACACAAA-TCACACATAAAAATCAGAAAAT 57
||||||||||||||||||||||||||| |||||||| |||||||||||| | |||||||
Sbjct 12 AAAAGCTCTCTTTGTGGATCACGAAACTATACACAAATTCACACATAAAATTTAGAAAAT 71
Query 58 ATGGGAGCCACCAAATTGACCCATGTGACCACCATTAACCCTAATAACACCAACATTCAT 117
||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 72 ATGGGAGGCACAAAATTGACCCATGTGACCACCACTAACCCTAATAACTCCAACATTCAT 131
Query 118 GGACCAGTCGTAGACGAAGTAGAAGGCCTTATTAAAGTTTACAAAGATGGCCACGTGGAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GGACCAGTCGTAGACGAAGTAGAAGGCCTTATTAAAGTTTACAAAGATGGCCACGTGGAA 191
Query 178 CGATCCCAGCTCGTGCCGTGTGTTGGTCCCTCACTACCCCTAGAGCTCGGCGTGGCTTGC 237
|||||||||||| |||| ||||||| ||||||||||||||| |||||||||||| |||||
Sbjct 192 CGATCCCAGCTCTTGCCATGTGTTGATCCCTCACTACCCCTCGAGCTCGGCGTGACTTGC 251
Query 238 TCTGATGTTGTCATAGACAACTTGACCAACGTATGGGCACGTCTCTACGTCCCGATGATG 297
|| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 252 TCCGATGTTGTTATAGACAAGTTGACCAACGTATGGGCACGTCTCTATGTCCCGATGA-- 309
Query 298 GCCACGACCAATTCGTCGGTCTCTAAGCTACTACCTTTGATTGTTTACTTCCACGGTGGA 357
|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 310 -CCACGACCAAGTCGTCGGTCTCTAAGCT-C--CCTTTGATTGTTTACTTCCACGGTGGA 365
Query 358 GGATTCTGCGTTGGCTCGACTTCTTGGTCGTGTTACCACGAGTTCTTGGCTAGATTGTCC 417
||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 366 GGATTCTGCGTCGGCTCGGCTTCTTGGTTGTGTTACCACGAGTTCTTGGCTAGATTGTCC 425
Query 418 TCTCGCTCGCGGTGCTTGGTTATGTCTGTAGATTACCGTCTAGCCCCTGAAAATCCTCTT 477
||||||||||||||||||||||||||||| |||||||||||||||| || || ||||||
Sbjct 426 GCTCGCTCGCGGTGCTTGGTTATGTCTGTAAATTACCGTCTAGCCCCAGAGAACCCTCTT 485
Query 478 CCGGCAGCTTACGAAGATGGGGTCAATGCCATTCTTTGGCTTAACAAAGCAAGAAACGAT 537
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 486 CCAGCAGCTTACGAAGATGGGGTCAATGCCATTCTTTGGCTCAACAAAGCAAGAAACGAT 545
Query 538 AACTTGTGGGCCAAGCAATGTGATTTTGGCAGAATATTCTTGGCCGGAGATAGCGCTGGA 597
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 546 AACTTGTGGGCCAAGCAATGTGACTTTGGCAGAATATTCTTGGCAGGAGATAGCGCTGGA 605
Query 598 GGCAACATCGCGGACCAAGTCGCAGCAAGATTAGCATCCACCGAAGATCTCA-CACTGAA 656
|||||||||||| | |||||||| ||||||||||||||| |||||||||| | |||||||
Sbjct 606 GGCAACATCGCGCAGCAAGTCGCGGCAAGATTAGCATCCCCCGAAGATCT-AGCACTGAA 664
Query 657 GATAGAAGGAACGATCCTGATCCAACCTTTCTACGGCGGAGAGGAGCGTACGGAGAGTGA 716
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 665 GATAGAAGGAACCATCCTGATCCAACCTTTCTACAGCGGAGAGGAGCGTACGGAGAGTGA 724
Query 717 GAAGCGCGTGGGTAACAACAAAAGTTCAGTGCTTACACTGGAGG-GTTCGGACGCGTGGT 775
|| ||||||||| ||| |||||| | ||||| ||||||| | || || |||| ||||
Sbjct 725 GAGGCGCGTGGGGAACGACAAAACAGCGGTGCTGACACTGGCGTCGTCCG-ACGCATGGT 783
Query 776 GGAGGCTGTCTTTGCCGCGGGGTGCAAACAGAGAGCATCCTTATTGTAAACCGGTGAAGA 835
||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 784 GGAGGATGTCTTTGCCACGTGGTGCAAACAGAGAGCATCCTTATTGTAAACCTGTGAAGA 843
Query 836 T--T-A--A-GTCGTCGACGGTGATAAGGACGCTGGTGTGCGTGGCCGAGATGGATTTGC 889
| | | | |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 844 TGATCATCAAGTCGTCGACGGTGACAAGGACGCTGGTGTGCGTGGCCGAGATGGATCTGC 903
Query 890 TGATGGACAGAAACATGGAGATGTGCGATGGTAATGAGGAAGTGATCAAGCGCGTGGTGC 949
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 904 TCATGGACAGCAACATGGAGATGTGCGATGGTAATGAGGACGTGATCAAGCGCGTGTTGC 963
Query 950 ACAAAGGCGTTGGTCACGCGTTTCATATTCTCGGAAAGTCTCAGCTTGCTCACACCACAA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ACAAAGGCGTTGGTCACGCGTTTCATATTCTCGGAAAGTCTCAGCTTGCTCACACCACAA 1023
Query 1010 CTCTAGAGATGTTGTGCCACATCGACGCTTTTATCCACCACGACGATCCCTTGAAAT-AG 1068
|||| |||||||||||||| ||||||||||||||||||||| |||||||||| |||| ||
Sbjct 1024 CTCTGGAGATGTTGTGCCAGATCGACGCTTTTATCCACCACTACGATCCCTT-AAATTAG 1082
Query 1069 TTCTGTATTTGTATAAATTATTTT 1092
||||||||| ||||| ||||||||
Sbjct 1083 TTCTGTATTAGTATATATTATTTT 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5