BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475990
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68640.1 | Symbols: PAN | bZIP transcription factor family p... 2045 0.0
AT1G68630.1 | Symbols: | PLAC8 family protein | chr1:25768539-... 383 3e-105
> AT1G68640.1 | Symbols: PAN | bZIP transcription factor family
protein | chr1:25769576-25772543 REVERSE LENGTH=1762
Length=1762
Score = 2045 bits (1107), Expect = 0.0
Identities = 1290/1376 (94%), Gaps = 22/1376 (2%)
Strand=Plus/Plus
Query 164 TCAACAACAATGCAGAGCAGCTTCAAAACCGTTCCTTTCAATCCTGATTTCTACTCTCAG 223
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 232 TCAACAACAATGCAGAGCAGCTTCAAAACCGTTCCTTTCACTCCTGATTTCTACTCTCAG 291
Query 224 TCCTCTTTCTTCTTCAGAGGAGATAGTTGCCTTGAAGAGTTTCATCAACCAGTTAATGGT 283
|| |||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 292 TCTTCTTACTTCTTCAGAGGAGATAGTTGTCTTGAGGAGTTTCATCAACCAGTCAATGGT 351
Query 284 TTTCACCATGAAGAAGCTATCGATTTAAGTCCAAATGTCACTATTGCTTCAGCCAACTTA 343
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 352 TTTCACCATGAAGAAGCTATCGATTTAAGTCCAAATGTCACTATTGCTTCAGCTAACTTA 411
Query 344 CACTACACGACGTTTGATACGGTTATGGA-----gt-gtggtggtggtggtggCTTGAGA 397
||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 412 CACTACACGACGTTTGATACGGTTATGGATTGTGGTGGTGGTGGTGGTGGTGGCTTGAGG 471
Query 398 GAGAGACTTG-A--AGGAGAAGAGGAGTGTTTGGACACAGGGCAATTAGTGTATCAGAAA 454
|||||||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 472 GAGAGACTTGAAGGAGGAGAAGAGGAGTGTTTGGACACAGGGCAACTAGTGTACCAGAAA 531
Query 455 GGGACAAGATTAGT-------CG-G-AGGAGAAGTGAACAGCAGTTGGTGTGATTCGGTT 505
|||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 532 GGGACAAGATTAGTAGGAGGAGGAGTAGGAGAAGTGAACAGCAGTTGGTGTGATTCGGTT 591
Query 506 TCAGCTATGGCTGATAACAGTCAACATACTGACACTTCCACAGATATTGATACTGATGAC 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TCAGCTATGGCTGATAACAGTCAACATACTGACACTTCCACAGATATTGATACTGATGAC 651
Query 566 AAGACTCAGTTAAATGGAGTTCATCAAGGGATGCTTTTGGCTACTAATTGTTCAGACCAA 625
||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||| |||
Sbjct 652 AAGACTCAGTTGAATGGAGGTCATCAAGGGATGCTATTGGCTACAAATTGTTCAGATCAA 711
Query 626 TCCAAGGTGAAATCTTGTGAACAAAGGACACTTCGACGACTAGCTCAGAATCGGGAGGCT 685
||||| ||||||||| |||| |||||||||||||| ||||| |||||||| |||||||||
Sbjct 712 TCCAATGTGAAATCTAGTGATCAAAGGACACTTCGTCGACTTGCTCAGAACCGGGAGGCT 771
Query 686 GCTAGGAAAAGTCGATTGAGGAAAAAGGCATATGTTCAGCAACTTGAGAATAGTCGAATA 745
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GCTAGGAAAAGTCGGTTGAGGAAAAAGGCATATGTTCAGCAACTTGAGAATAGTCGAATC 831
Query 746 AGG-TTAGCGCAGCTAGAGGAAGAGCTCAAAAGAGCTCGCCAACAGGGATCTTTGGTCGA 804
||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 832 AGGCTT-GCACAGCTAGAGGAAGAGCTCAAAAGAGCTCGCCAACAGGGATCTTTGGTTGA 890
Query 805 AAGCGGAGTTTCAGCGGATCACACTCATTTGGCAGCTGGAAATGGTGCCTTTTCATTTGA 864
||| |||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||
Sbjct 891 AAGAGGAGTTTCAGCGGATCACACGCATTTGGCAGCCGGAAATGGTGTCTTTTCATTTGA 950
Query 865 ATTGGAATATACACGTTGGAAGGAGGAGCATCAAA-AGCTGATCAACGACTTAAGATCGG 923
|||||||||||||||||||||||| || ||||||| | |||||||||||||||||||||
Sbjct 951 ATTGGAATATACACGTTGGAAGGAAGAACATCAAAGAA-TGATCAACGACTTAAGATCGG 1009
Query 924 GTGTGAATTCGCAGTTAGGTGACAATGATCTACGAGTGCTAGTGGATGCTGTGATGAGTC 983
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1010 GTGTGAATTCGCAGTTAGGTGACAACGATCTACGCGTTCTAGTGGATGCTGTGATGAGTC 1069
Query 984 ACTACGATGAAATATTCAGGCTAAAGGGAATTGGCACTAAAGTTGACGTCTTTCATATGC 1043
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1070 ACTATGATGAAATATTCAGGCTAAAGGGAATTGGTACTAAAGTTGACGTCTTTCATATGC 1129
Query 1044 TCTCAGGCATGTGGAAGACGCCTGCTGAGAGATTTTTCATGTGGTTAGGTGGATTTAGAT 1103
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1130 TCTCAGGCATGTGGAAGACACCTGCCGAGAGATTTTTCATGTGGTTAGGTGGATTTAGAT 1189
Query 1104 CATCTGAGTTACTTAAGATATTGGGGAACCATGTTGATCCGTTGACGGATCAGCAGTTGA 1163
|||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1190 CATCAGAGTTACTTAAGATATTGGGGAACCATGTGGATCCATTGACGGACCAGCAGTTGA 1249
Query 1164 TAGGCATCTGCAACCTTCAACAGTCGTCTCAGCAAGCAGAGGATGCATTGTCACAAGGCA 1223
||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1250 TAGGCATTTGCAACCTTCAGCAATCGTCTCAACAAGCAGAGGATGCATTGTCACAAGGCA 1309
Query 1224 TGGAAGCTCTGCAACAATCGCTTCTAGAGACGCTTTCCTCTGCTTCAATGGGTCCTAACT 1283
|||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1310 TGGAAGCTCTACAACAATCACTTCTCGAGACGCTTTCTTCTGCTTCAATGGGTCCAAACT 1369
Query 1284 CTTCAGCAAATGTTGCAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCA 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 CTTCAGCAAATGTTGCAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCA 1429
Query 1344 CTCTCGAAAACTTTCTTCGCCAGGCTGATCTATTGAGGCAACAAACTCTACAACAGCTTC 1403
|||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1430 CTCTTGAAAACTTCCTTCGCCAGGCTGATTTATTGAGGCAACAAACTCTGCAACAGCTTC 1489
Query 1404 ACAGAATTCTTACCACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCATGACTATATTT 1463
|||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1490 ACAGAATTCTCACCACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCACGATTATATTT 1549
Query 1464 CTCGGCTTAGAGCACTTAGCTCTCTATGGTTAGCCCGGCCTAGGGACTAAAGAAAA 1519
||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||||
Sbjct 1550 CTCGGCTTAGAGCACTTAGCTCTCTATGGTTAGCCAGACCTAGAGACTAAATAAAA 1605
Score = 108 bits (58), Expect = 2e-22
Identities = 65/68 (96%), Gaps = 1/68 (1%)
Strand=Plus/Plus
Query 1537 GCTCTCCTCTTTAGTGTCTTTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 1596
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 GCTCTTCTCTTTAGTGT-ATTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 1754
Query 1597 TCAGAATC 1604
||||||||
Sbjct 1755 TCAGAATC 1762
Score = 95.3 bits (51), Expect = 2e-18
Identities = 88/103 (85%), Gaps = 13/103 (13%)
Strand=Plus/Plus
Query 1 TtctctctctctctcACAATATAGTAATTTCGTATTTATTAATGATGAA------A-C-- 51
||||||||||| | ||||||||||||||||||||||||||||||||||| | |
Sbjct 4 TTCTCTCTCTCACACACAATATAGTAATTTCGTATTTATTAATGATGAATCCTCCAGCCG 63
Query 52 T---GATTCGCCATCTTTTCACCTCTTTAATGAATTCTCCTCC 91
| ||||||||||||||||||||||||||||||||||| |||
Sbjct 64 TACTGATTCGCCATCTTTTCACCTCTTTAATGAATTCTC-TCC 105
> AT1G68630.1 | Symbols: | PLAC8 family protein | chr1:25768539-25770260
FORWARD LENGTH=1402
Length=1402
Score = 383 bits (207), Expect = 3e-105
Identities = 235/249 (94%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 1119 AGATATTGGGGAACCATGTTGATCCGTTGACGGATCAGCAGTTGATAGGCATCTGCAACC 1178
||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||
Sbjct 1363 AGATATTGGGGAACCATGTGGATCCATTGACGGACCAGCAGTTGATAGGCATTTGCAACC 1304
Query 1179 TTCAACAGTCGTCTCAGCAAGCAGAGGATGCATTGTCACAAGGCATGGAAGCTCTGCAAC 1238
|||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1303 TTCAGCAATCGTCTCAACAAGCAGAGGATGCATTGTCACAAGGCATGGAAGCTCTACAAC 1244
Query 1239 AATCGCTTCTAGAGACGCTTTCCTCTGCTTCAATGGGTCCTAACTCTTCAGCAAATGTTG 1298
|||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1243 AATCACTTCTCGAGACGCTTTCTTCTGCTTCAATGGGTCCAAACTCTTCAGCAAATGTTG 1184
Query 1299 CAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCACTCTCGAAAACTTTC 1358
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1183 CAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCACTCTTGAAAACTTCC 1124
Query 1359 TTCGCCAGG 1367
|||||||||
Sbjct 1123 TTCGCCAGG 1115
Score = 239 bits (129), Expect = 7e-62
Identities = 152/163 (93%), Gaps = 1/163 (1%)
Strand=Plus/Minus
Query 1357 TCTTCGCCAGGCTGATCTATTGAGGCAACAAACTCTACAACAGCTTCACAGAATTCTTAC 1416
|||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1036 TCTTTG-CAGGCTGATTTATTGAGGCAACAAACTCTGCAACAGCTTCACAGAATTCTCAC 978
Query 1417 CACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCATGACTATATTTCTCGGCTTAGAGC 1476
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 977 CACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCACGATTATATTTCTCGGCTTAGAGC 918
Query 1477 ACTTAGCTCTCTATGGTTAGCCCGGCCTAGGGACTAAAGAAAA 1519
|||||||||||||||||||||| | ||||| ||||||| ||||
Sbjct 917 ACTTAGCTCTCTATGGTTAGCCAGACCTAGAGACTAAATAAAA 875
Score = 108 bits (58), Expect = 2e-22
Identities = 65/68 (96%), Gaps = 1/68 (1%)
Strand=Plus/Minus
Query 1537 GCTCTCCTCTTTAGTGTCTTTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 1596
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GCTCTTCTCTTTAGTGT-ATTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 726
Query 1597 TCAGAATC 1604
||||||||
Sbjct 725 TCAGAATC 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79216460010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5