BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475990 Length=1604 Score E Sequences producing significant alignments: (Bits) Value AT1G68640.1 | Symbols: PAN | bZIP transcription factor family p... 2045 0.0 AT1G68630.1 | Symbols: | PLAC8 family protein | chr1:25768539-... 383 3e-105 > AT1G68640.1 | Symbols: PAN | bZIP transcription factor family protein | chr1:25769576-25772543 REVERSE LENGTH=1762 Length=1762 Score = 2045 bits (1107), Expect = 0.0 Identities = 1290/1376 (94%), Gaps = 22/1376 (2%) Strand=Plus/Plus Query 164 TCAACAACAATGCAGAGCAGCTTCAAAACCGTTCCTTTCAATCCTGATTTCTACTCTCAG 223 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 232 TCAACAACAATGCAGAGCAGCTTCAAAACCGTTCCTTTCACTCCTGATTTCTACTCTCAG 291 Query 224 TCCTCTTTCTTCTTCAGAGGAGATAGTTGCCTTGAAGAGTTTCATCAACCAGTTAATGGT 283 || |||| ||||||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct 292 TCTTCTTACTTCTTCAGAGGAGATAGTTGTCTTGAGGAGTTTCATCAACCAGTCAATGGT 351 Query 284 TTTCACCATGAAGAAGCTATCGATTTAAGTCCAAATGTCACTATTGCTTCAGCCAACTTA 343 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 352 TTTCACCATGAAGAAGCTATCGATTTAAGTCCAAATGTCACTATTGCTTCAGCTAACTTA 411 Query 344 CACTACACGACGTTTGATACGGTTATGGA-----gt-gtggtggtggtggtggCTTGAGA 397 ||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 412 CACTACACGACGTTTGATACGGTTATGGATTGTGGTGGTGGTGGTGGTGGTGGCTTGAGG 471 Query 398 GAGAGACTTG-A--AGGAGAAGAGGAGTGTTTGGACACAGGGCAATTAGTGTATCAGAAA 454 |||||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 472 GAGAGACTTGAAGGAGGAGAAGAGGAGTGTTTGGACACAGGGCAACTAGTGTACCAGAAA 531 Query 455 GGGACAAGATTAGT-------CG-G-AGGAGAAGTGAACAGCAGTTGGTGTGATTCGGTT 505 |||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 532 GGGACAAGATTAGTAGGAGGAGGAGTAGGAGAAGTGAACAGCAGTTGGTGTGATTCGGTT 591 Query 506 TCAGCTATGGCTGATAACAGTCAACATACTGACACTTCCACAGATATTGATACTGATGAC 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 TCAGCTATGGCTGATAACAGTCAACATACTGACACTTCCACAGATATTGATACTGATGAC 651 Query 566 AAGACTCAGTTAAATGGAGTTCATCAAGGGATGCTTTTGGCTACTAATTGTTCAGACCAA 625 ||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||| ||| Sbjct 652 AAGACTCAGTTGAATGGAGGTCATCAAGGGATGCTATTGGCTACAAATTGTTCAGATCAA 711 Query 626 TCCAAGGTGAAATCTTGTGAACAAAGGACACTTCGACGACTAGCTCAGAATCGGGAGGCT 685 ||||| ||||||||| |||| |||||||||||||| ||||| |||||||| ||||||||| Sbjct 712 TCCAATGTGAAATCTAGTGATCAAAGGACACTTCGTCGACTTGCTCAGAACCGGGAGGCT 771 Query 686 GCTAGGAAAAGTCGATTGAGGAAAAAGGCATATGTTCAGCAACTTGAGAATAGTCGAATA 745 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 GCTAGGAAAAGTCGGTTGAGGAAAAAGGCATATGTTCAGCAACTTGAGAATAGTCGAATC 831 Query 746 AGG-TTAGCGCAGCTAGAGGAAGAGCTCAAAAGAGCTCGCCAACAGGGATCTTTGGTCGA 804 ||| || || ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 832 AGGCTT-GCACAGCTAGAGGAAGAGCTCAAAAGAGCTCGCCAACAGGGATCTTTGGTTGA 890 Query 805 AAGCGGAGTTTCAGCGGATCACACTCATTTGGCAGCTGGAAATGGTGCCTTTTCATTTGA 864 ||| |||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| Sbjct 891 AAGAGGAGTTTCAGCGGATCACACGCATTTGGCAGCCGGAAATGGTGTCTTTTCATTTGA 950 Query 865 ATTGGAATATACACGTTGGAAGGAGGAGCATCAAA-AGCTGATCAACGACTTAAGATCGG 923 |||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||| Sbjct 951 ATTGGAATATACACGTTGGAAGGAAGAACATCAAAGAA-TGATCAACGACTTAAGATCGG 1009 Query 924 GTGTGAATTCGCAGTTAGGTGACAATGATCTACGAGTGCTAGTGGATGCTGTGATGAGTC 983 ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct 1010 GTGTGAATTCGCAGTTAGGTGACAACGATCTACGCGTTCTAGTGGATGCTGTGATGAGTC 1069 Query 984 ACTACGATGAAATATTCAGGCTAAAGGGAATTGGCACTAAAGTTGACGTCTTTCATATGC 1043 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1070 ACTATGATGAAATATTCAGGCTAAAGGGAATTGGTACTAAAGTTGACGTCTTTCATATGC 1129 Query 1044 TCTCAGGCATGTGGAAGACGCCTGCTGAGAGATTTTTCATGTGGTTAGGTGGATTTAGAT 1103 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 1130 TCTCAGGCATGTGGAAGACACCTGCCGAGAGATTTTTCATGTGGTTAGGTGGATTTAGAT 1189 Query 1104 CATCTGAGTTACTTAAGATATTGGGGAACCATGTTGATCCGTTGACGGATCAGCAGTTGA 1163 |||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| Sbjct 1190 CATCAGAGTTACTTAAGATATTGGGGAACCATGTGGATCCATTGACGGACCAGCAGTTGA 1249 Query 1164 TAGGCATCTGCAACCTTCAACAGTCGTCTCAGCAAGCAGAGGATGCATTGTCACAAGGCA 1223 ||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||| Sbjct 1250 TAGGCATTTGCAACCTTCAGCAATCGTCTCAACAAGCAGAGGATGCATTGTCACAAGGCA 1309 Query 1224 TGGAAGCTCTGCAACAATCGCTTCTAGAGACGCTTTCCTCTGCTTCAATGGGTCCTAACT 1283 |||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |||| Sbjct 1310 TGGAAGCTCTACAACAATCACTTCTCGAGACGCTTTCTTCTGCTTCAATGGGTCCAAACT 1369 Query 1284 CTTCAGCAAATGTTGCAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCA 1343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 CTTCAGCAAATGTTGCAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCA 1429 Query 1344 CTCTCGAAAACTTTCTTCGCCAGGCTGATCTATTGAGGCAACAAACTCTACAACAGCTTC 1403 |||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 1430 CTCTTGAAAACTTCCTTCGCCAGGCTGATTTATTGAGGCAACAAACTCTGCAACAGCTTC 1489 Query 1404 ACAGAATTCTTACCACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCATGACTATATTT 1463 |||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1490 ACAGAATTCTCACCACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCACGATTATATTT 1549 Query 1464 CTCGGCTTAGAGCACTTAGCTCTCTATGGTTAGCCCGGCCTAGGGACTAAAGAAAA 1519 ||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||| Sbjct 1550 CTCGGCTTAGAGCACTTAGCTCTCTATGGTTAGCCAGACCTAGAGACTAAATAAAA 1605 Score = 108 bits (58), Expect = 2e-22 Identities = 65/68 (96%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 1537 GCTCTCCTCTTTAGTGTCTTTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 1596 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1696 GCTCTTCTCTTTAGTGT-ATTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 1754 Query 1597 TCAGAATC 1604 |||||||| Sbjct 1755 TCAGAATC 1762 Score = 95.3 bits (51), Expect = 2e-18 Identities = 88/103 (85%), Gaps = 13/103 (13%) Strand=Plus/Plus Query 1 TtctctctctctctcACAATATAGTAATTTCGTATTTATTAATGATGAA------A-C-- 51 ||||||||||| | ||||||||||||||||||||||||||||||||||| | | Sbjct 4 TTCTCTCTCTCACACACAATATAGTAATTTCGTATTTATTAATGATGAATCCTCCAGCCG 63 Query 52 T---GATTCGCCATCTTTTCACCTCTTTAATGAATTCTCCTCC 91 | ||||||||||||||||||||||||||||||||||| ||| Sbjct 64 TACTGATTCGCCATCTTTTCACCTCTTTAATGAATTCTC-TCC 105 > AT1G68630.1 | Symbols: | PLAC8 family protein | chr1:25768539-25770260 FORWARD LENGTH=1402 Length=1402 Score = 383 bits (207), Expect = 3e-105 Identities = 235/249 (94%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 1119 AGATATTGGGGAACCATGTTGATCCGTTGACGGATCAGCAGTTGATAGGCATCTGCAACC 1178 ||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||| Sbjct 1363 AGATATTGGGGAACCATGTGGATCCATTGACGGACCAGCAGTTGATAGGCATTTGCAACC 1304 Query 1179 TTCAACAGTCGTCTCAGCAAGCAGAGGATGCATTGTCACAAGGCATGGAAGCTCTGCAAC 1238 |||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1303 TTCAGCAATCGTCTCAACAAGCAGAGGATGCATTGTCACAAGGCATGGAAGCTCTACAAC 1244 Query 1239 AATCGCTTCTAGAGACGCTTTCCTCTGCTTCAATGGGTCCTAACTCTTCAGCAAATGTTG 1298 |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1243 AATCACTTCTCGAGACGCTTTCTTCTGCTTCAATGGGTCCAAACTCTTCAGCAAATGTTG 1184 Query 1299 CAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCACTCTCGAAAACTTTC 1358 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1183 CAGATTATATGGGTCATATGGCTATGGCTATGGGCAAACTTGGCACTCTTGAAAACTTCC 1124 Query 1359 TTCGCCAGG 1367 ||||||||| Sbjct 1123 TTCGCCAGG 1115 Score = 239 bits (129), Expect = 7e-62 Identities = 152/163 (93%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 1357 TCTTCGCCAGGCTGATCTATTGAGGCAACAAACTCTACAACAGCTTCACAGAATTCTTAC 1416 |||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||| || Sbjct 1036 TCTTTG-CAGGCTGATTTATTGAGGCAACAAACTCTGCAACAGCTTCACAGAATTCTCAC 978 Query 1417 CACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCATGACTATATTTCTCGGCTTAGAGC 1476 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 977 CACACGACAAGCTGCTCGCGCCTTTTTGGTCATCCACGATTATATTTCTCGGCTTAGAGC 918 Query 1477 ACTTAGCTCTCTATGGTTAGCCCGGCCTAGGGACTAAAGAAAA 1519 |||||||||||||||||||||| | ||||| ||||||| |||| Sbjct 917 ACTTAGCTCTCTATGGTTAGCCAGACCTAGAGACTAAATAAAA 875 Score = 108 bits (58), Expect = 2e-22 Identities = 65/68 (96%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 1537 GCTCTCCTCTTTAGTGTCTTTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 1596 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 784 GCTCTTCTCTTTAGTGT-ATTAGATCATCTGTTTATTTAGTTGGTAGTGAACGTTACCAT 726 Query 1597 TCAGAATC 1604 |||||||| Sbjct 725 TCAGAATC 718 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79216460010 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5