BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475991
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68650.1 | Symbols: | Uncharacterized protein family (UPF00... 1509 0.0
> AT1G68650.1 | Symbols: | Uncharacterized protein family (UPF0016)
| chr1:25775741-25777874 FORWARD LENGTH=962
Length=962
Score = 1509 bits (817), Expect = 0.0
Identities = 903/944 (96%), Gaps = 8/944 (1%)
Strand=Plus/Plus
Query 1 AAAAAACATTCACCTTCTCTTACGCGACTCTCGCCGGAAACAGATCGCTCCGCCGTGATC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 16 AAAAAACATTCACCTTCTCTTACGCGACTCTCGCCGGAAACAGATCGCTCCGCCGTGAAC 75
Query 61 TCGGAAGCAATGGGCTCTCTTTTGCAGGGTTTTACTAAATCACTCGCCATGACTTTCCTC 120
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 TCGGAAGCCATGGGGTCACTTTTGCAGGGTTTTACTAAATCACTCGCCATGACTTTCCTC 135
Query 121 TCCGAGATTGGTGACAAAACGTTCTTCGCTGCTGCTATTTTGGCAATGCGTTATCCTAGG 180
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 136 TCCGAGATTGGTGACAAAACGTTCTTCGCTGCTGCTATTTTGGCGATGCGGTATCCTAGG 195
Query 181 AGACTTGTATTAGCTGGTTGTTTATCGGCTTTGATTGTCATGACTATATTATCTACTACA 240
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 196 AGGCTTGTATTAGCTGGTTGTTTATCAGCTTTGATTGTCATGACTATATTATCTGCTACA 255
Query 241 CTCGGTTGGGCTGCTCCTAATCTGATCTCTCGTAAATGGACTCATCATATAACAACATTG 300
|| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 256 CTTGGTTGGGCTGCTCCAAATCTGATCTCTCGGAAATGGACTCATCATATAACAACATTC 315
Query 301 TTGTTCTTTGGCTTCGGGTTATGGTCTTTATGGGACGGTTTTAAAGAAGGAGGGGGTTCT 360
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 316 TTGTTCTTTGGCTTTGGGTTATGGTCTTTGTGGGATGGTTTTAAAGAAGGAGGAGGTTCT 375
Query 361 GAAGAATTGGCAGAAGTTGAAGCAGAACTGGATTCTGATTTGAAGAAGACTAATGATCAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GAAGAATTGGCAGAAGTTGAAGCAGAACTGGATTCTGATTTGAAGAAGACTAATGATCAA 435
Query 421 TCaaaaaaaGACAGCAGTAAGATTGAAGATGAACAGAAAAAGCAGAAAAGACCATTCCTT 480
|| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TC---GAAA-A-A-CAGTAAGATTGAAGATGAACAGAAAAAGCAGAAAAGACCATTCCTT 489
Query 481 ACTGCTTTCTTCTCTCCCATTTTTCTCAAGGCGTTTTCAATTAACTTCTTTGGTGAGTGG 540
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 490 ACTGCATTCTTCTCTCCCATTTTTCTCAAGGCGTTTTCGATTAACTTCTTTGGTGAATGG 549
Query 541 GGTGACAAGAGTCAGCTTGCGACTATTGGTTTGGCTGCAGATGAAAATCCACTTGGCGTG 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 550 GGTGACAAGAGTCAGCTTGCGACCATTGGTTTGGCTGCAGATGAAAATCCACTCGGCGTG 609
Query 601 GTCCTTGGTGGAATTTTGGCACAAACATTGTGTACCACAGCTGCTGTGCTTGGTGGCAAG 660
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GTCCTTGGCGGAATTGTGGCACAAACATTGTGTACCACAGCTGCTGTGCTTGGTGGCAAG 669
Query 661 AGCTTAGCATCTCAAATATCCGAACGAATTGTGGCTCTTTCCGGTGGAATGCTTTTCATT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 AGCTTAGCATCTCAAATATCCGAACGAATTGTGGCTCTTTCCGGTGGAATGCTTTTCATT 729
Query 721 ATTTTCGGCATCCAGTCACTTCTTACTCCGGTTGATGCTTGATACATCTATATGGTATCC 780
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ATCTTCGGCATTCAGTCGCTTCTTACTCCGGTTGATGCTTGATACATCTATATGGTATCC 789
Query 781 CCTCAATGTCTTGAAACTGCAGGTTTCTTGGGTTTGAATGCTTTTTTGG-CGAGATGAAA 839
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 790 CATCAATGTCTTGAAACTGCAGGTTTCTTGGGTTTGAATGCTTTTTTGGGCGAGATGAAA 849
Query 840 CTGAAACATGTCACTCCCTTACAATTGCTTAGATACATTCAC-TTAGTGATTACAGAATC 898
| |||||| |||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 850 CCGAAACACGTCACTCCCTTACAATTGCTTAGATACATTTACATTAGTGATTACAGAATC 909
Query 899 AGAAAGATTCATCTGTAACACCATTTGAATTCAATAAAGTTTTG 942
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 910 AGAAAGATTCATCTGTAACACCATTTGACTTCAATAAAGTTTTG 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5