BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475994
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68670.1 | Symbols: | myb-like transcription factor family ... 1661 0.0
AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor fam... 145 1e-33
AT1G25550.1 | Symbols: | myb-like transcription factor family ... 52.8 9e-06
> AT1G68670.1 | Symbols: | myb-like transcription factor family
protein | chr1:25782029-25784076 FORWARD LENGTH=1583
Length=1583
Score = 1661 bits (899), Expect = 0.0
Identities = 1163/1282 (91%), Gaps = 52/1282 (4%)
Strand=Plus/Plus
Query 36 AAACCAAAActctctctctctatctctatctctatctctatctctT--CAAAT-ATCAAA 92
||||| |||| | ||||||| ||||| ||||| |||||||||||| |||| | ||||
Sbjct 130 AAACCTAAAC-C-CTCTCTC--TCTCTCTCTCTCTCTCTATCTCTTGAAAAATCAACAAA 185
Query 93 ACATTGGAATCAATTTCTCTATGTTTTGATTCCATTTTAAAGATCCAATATTCCTTCTCC 152
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 186 ACATTGGAATCAATTTCTCTATGTTTTGATTCTATTTTAAAGATCCAATATTCTTTCTCC 245
Query 153 ATTTGAAAAGTAAGCTTCTTTCTTCGCTGTCGTCTCTCTGTAGATCTTGGTTCTTGGTCC 212
| ||| | | |||||||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 246 A-TTG-AGATTAAGCTTCTTTC-TCGCTGTCGTCTCTCTATAGATCTTGGTTCTTAGTCC 302
Query 213 CTTTAGAATAATAATGATGGTGGAGATGGATTACGCTAAGAAAATGCAGAAATGTCATGA 272
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CTTTTGAATAATAATGATGGTGGAGATGGATTACGCTAAGAAAATGCAGAAATGTCATGA 362
Query 273 ATACGTTGAAGCACTTGAAGAAGAACAAAAGAAAATCCAAGTCTTTCAACGCGAGCTTCC 332
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 363 ATACGTTGAAGCACTTGAAGAAGAACAGAAGAAAATCCAAGTCTTTCAACGCGAGCTTCC 422
Query 333 TTTATGTTTAGAGCTTGTTACTCAAGCGATCGAAGCTTGTCGGAAGGAGTTATCTGGT-- 390
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 423 TTTATGTTTAGAGCTTGTCACTCAAGCGATCGAAGCTTGTCGGAAGGAGTTATCTGGTAC 482
Query 391 -ACGACAACAACATCAGAACAGTGTTCGGAACAGACAATAAGTGTTTGTGGTGGTCCTGT 449
|||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 483 GACGACAACTACATCAGAACAGTGTTCAGAACAGACCACAAGTGTTTGTGGTGGTCCTGT 542
Query 450 CTTTGAAGAGTTTATTCCTATCAAG--AA-GAGGT-C--GT-T---G-TGT----gaaga 494
||||||||||||||||||||||||| || || | | || | | || |||||
Sbjct 543 CTTTGAAGAGTTTATTCCTATCAAGAAAATTAGTTCCTTGTGTGAAGAAGTACAAGAAGA 602
Query 495 agaagaagaagaTGGTGAACATGAATCTTCTCCAGAGCTTGAACAGATTGGTAATAATAA 554
|||||||||||||||||||||||||||||||||||| ||| | | | ||||||||
Sbjct 603 AGAAGAAGAAGATGGTGAACATGAATCTTCTCCAGAACTT-----G--T-G-AATAATAA 653
Query 555 GAAATCTGATTGGCTTAGATCTGTTCAGTTATGGACTCCA-TCACCAGATCTTAACCCGA 613
|||||| ||||||||||||||||||||| |||||| | || ||||| ||||| || || |
Sbjct 654 GAAATCAGATTGGCTTAGATCTGTTCAGCTATGGAAT-CATTCACCGGATCTAAATCCAA 712
Query 614 AAGAGGAGCGTGTAGTTAAGAAAGCGAAAGTGGTGGAGGTGACACCAAAAAGCGGTGCGT 673
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 713 AAGAGGAGCGTGTAGCTAAGAAAGCGAAAGTGGTGGAGGTGAAACCAAAAAGCGGTGCGT 772
Query 674 TTCAGCCGTTTCAAAAGGAGAAAAAACGCGTTTTGGAGACTGATTTGCAACCGGCGGTGA 733
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct 773 TTCAGCCGTTTC-AAA--AG------CGCGTTTTGGAGACTGATTTGCAACCGGCGGTGA 823
Query 734 AAGTAGCTAGTTCGACGCCGGCGACGACGACGAGTTCTACGACGGAAACTGGTGGTGCTA 793
||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| ||
Sbjct 824 AAGTAGCTAGTTCGATGCCAGCGACGACGACGAGTTCTACGACGGAAACTTGTGGTGGTA 883
Query 794 AAAGTGAGTTGGTTAAAG-TGGGAGAGGAGCAGAGACAGATAGAGCAGCAGCAATCGCAG 852
||||||| ||| |||||| | ||||| ||| | |||| ||||||||||||||||||||||
Sbjct 884 AAAGTGATTTGATTAAAGCT-GGAGATGAGGAAAGACGGATAGAGCAGCAGCAATCGCAG 942
Query 853 TCGCAAACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAGTTACACCGGCGATTCTTA 912
||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 943 TCGCATACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTA 1002
Query 913 AACGCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACGCCTAAA-CAGATTAGAGATCA 971
|||||||||||||||||||||||||||||||||||||| || ||| || || || |||||
Sbjct 1003 AACGCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACACC-AAAGCAAATCAGGGATCA 1061
Query 972 TATGAAAGTCGATGGATTAACAAATGACGAAGTTAAAAGCCATTTACAGAAATATAGACT 1031
||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1062 CATGAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAGACT 1121
Query 1032 TCACACAAGAAGGCCAGCAGCAACATCGGTGGCGGCACAGAGCAACGGAAACCCGCAACA 1091
||||||||||||||||||||||||||| ||||||||||| || | ||| || | ||||||
Sbjct 1122 TCACACAAGAAGGCCAGCAGCAACATCCGTGGCGGCACAAAGTACCGGGAATCAGCAACA 1181
Query 1092 ACCGCAATTTGTGGTGGTTGGAGGCATATGGGTACCATCGCCACAAGATTTTCCACCACC 1151
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1182 ACCACAATTTGTGGTGGTTGGAGGCATATGGGTACCATCGTCACAAGATTTTCCACCACC 1241
Query 1152 GTCCGATGTAGCCAACAACGGTGGTGTATATGCTCCGGTTGCGGTGGCGCAATCTCCAAA 1211
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GTCCGATGTAGCCAACAAGGGTGGTGTATATGCTCCGGTTGCGGTGGCGCAATCTCCAAA 1301
Query 1212 ACGTTCGGTGGAGAGAAGTTGTAACTCGCCGGCAGCATCTTCCTCTACAAATACAAATAC 1271
||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1302 ACGTTCGTTGGAGAGAAGTTGCAACTCGCCGGCGGCATCTTCCTCTACAAATACAAATAC 1361
Query 1272 TTCTACTCCTGTATCATAATCT 1293
|||||||||||| |||||||||
Sbjct 1362 TTCTACTCCTGTGTCATAATCT 1383
Score = 178 bits (96), Expect = 1e-43
Identities = 129/144 (90%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 1293 TTATGTGAGTGTaaaaaaaaaaTTCGTCCG-TTTTGTTTGTAACAAAGAAATGTTATTTC 1351
|||||||| ||||| ||| | |||||||| ||||||||||||| |||||||||||||||
Sbjct 1440 TTATGTGAATGTAAGAAATATTTTCGTCCGTTTTTGTTTGTAACCAAGAAATGTTATTTC 1499
Query 1352 CTAGGTTGGAAATTTTGAATAAAGTAGACGAATGC-A--ATGTAGTATATACACGAGAGA 1408
|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1500 CTCGGTTGGAAATTTTGAATAAAGTAGACGAATGCTACTATGTAGTATATACACGAGA-- 1557
Query 1409 TAAGTAAAGAATCTTTGTTTTTCT 1432
||||| |||| |||||||||||||
Sbjct 1558 TAAGTGAAGACTCTTTGTTTTTCT 1581
Score = 52.8 bits (28), Expect = 9e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 TTTAGGTACGCGACGGCCCGACCTCGAT 28
||||||||||||||||||||||||||||
Sbjct 76 TTTAGGTACGCGACGGCCCGACCTCGAT 103
> AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor family
protein | chr1:4556892-4558708 FORWARD LENGTH=1237
Length=1237
Score = 145 bits (78), Expect = 1e-33
Identities = 151/186 (81%), Gaps = 6/186 (3%)
Strand=Plus/Plus
Query 865 AGAAAACAAAGGCGGTGCTGGTCGCCGGAGTTACACCGGCGATTCTTAAACGCGCTTCAG 924
||||| ||||| |||| |||||| || | || || | || ||||| ||||| |||||
Sbjct 623 AGAAAGCAAAGAAGGTGTTGGTCGTCGCAATTGCATAGACGCTTCTTGAACGCTCTTCAA 682
Query 925 CAGCTT-GGAGGATCTCATGTTGCTACGCCTAAA-CAGATTAGAGA-TCATATGAAAGTC 981
|| ||| || ||| ||||||| |||||||| ||| || || || || | |||||| ||
Sbjct 683 CA-CTTAGGTGGACCTCATGTAGCTACGCC-AAAGCAAATCAGGGAGT-TTATGAAGGTT 739
Query 982 GATGGATTAACAAATGACGAAGTTAAAAGCCATTTACAGAAATATAGACTTCACACAAGA 1041
||||| ||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 740 GATGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGCATACAAGA 799
Query 1042 AGGCCA 1047
||||||
Sbjct 800 AGGCCA 805
> AT1G25550.1 | Symbols: | myb-like transcription factor family
protein | chr1:8976434-8978093 FORWARD LENGTH=1396
Length=1396
Score = 52.8 bits (28), Expect = 9e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 TTTAGGTACGCGACGGCCCGACCTCGAT 28
||||||||||||||||||||||||||||
Sbjct 17 TTTAGGTACGCGACGGCCCGACCTCGAT 44
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5