BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476004

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68765.1 | Symbols: IDA | Putative membrane lipoprotein | ch...   540    5e-153


> AT1G68765.1 | Symbols: IDA | Putative membrane lipoprotein | 
chr1:25829952-25830487 REVERSE LENGTH=536
Length=536

 Score =  540 bits (292),  Expect = 5e-153
 Identities = 395/442 (89%), Gaps = 18/442 (4%)
 Strand=Plus/Plus

Query  1    TTACTTAAAGAAGTGGAAGTG---AAATCTAG-AAAA-AG-AG-AAAAAGACATTGATTA  53
            ||||| |||||||||||||||   |||| ||| |||| || || ||||| ||||||| ||
Sbjct  35   TTACTCAAAGAAGTGGAAGTGAAAAAAT-TAGAAAAAGAGAAGAAAAAAAACATTGACTA  93

Query  54   CCAAATGGCTCCGTGTCGTAGGATGATGGTTCTGCTCTGTTTTGTTCTGTTTCTGGTGAT  113
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |  
Sbjct  94   CCAAATGGCTCCGTGTCGTACGATGATGGTTCTGCTCTGTTTTGTTCTGTTTCTCGCGGC  153

Query  114  GAATAGTTCTTGTGCGGCGGCTGCAAGAATCGGAGCCACGACGGAGATGAAGAAGAATAG  173
            || |||||||||||  |||||||||||||| |||||||| | ||||||||||||||||| 
Sbjct  154  GAGTAGTTCTTGTGTAGCGGCTGCAAGAATTGGAGCCACCATGGAGATGAAGAAGAATAT  213

Query  174  AAAGAGCTT-AGGAGTTAAATACAACCATATTTTTGGTTACTTACCTAAAGGCGTTCCCA  232
            |||||| || | |  ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  214  AAAGAGATTAACG-TTTAAAAACAGCCATATTTTTGGTTACTTACCTAAAGGCGTTCCCA  272

Query  233  TTCCTCCTTCTGCTCCTTCTAAGAGACACAACTCTTTTGTTGACTCTCTTCCTCattgat  292
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  273  TTCCTCCTTCTGCTCCTTCTAAGAGACACAACTCTTTTGTTAACTCTCTTCCTCATTGAT  332

Query  293  ttcattttgattt-attcattgtattcttttgggttttgttttgtagattagattAACAT  351
            |||||||| |||| ||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct  333  TTCATTTT-ATTTTATTCATTGTATTCTTTTAGGTTTGGTTTTGTAGATTAGATCAACAT  391

Query  352  AGGGTAT-A--CTCTTTTTATATGCATACGATTTATATATACTTTGGAATTTGATCCTTT  408
            ||||||| |  |||||| |||||||||||||||||||| |||||| ||||||| ||||||
Sbjct  392  AGGGTATTATACTCTTTGTATATGCATACGATTTATATTTACTTTTGAATTTGTTCCTTT  451

Query  409  TTATGATTAT-GAACT-AATAT  428
            ||||| |||| || || |||||
Sbjct  452  TTATGTTTATAGA-CTTAATAT  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5