BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476005
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68780.1 | Symbols: | RNI-like superfamily protein | chr1:2... 2708 0.0
> AT1G68780.1 | Symbols: | RNI-like superfamily protein | chr1:25831803-25833844
REVERSE LENGTH=1886
Length=1886
Score = 2708 bits (1466), Expect = 0.0
Identities = 1698/1808 (94%), Gaps = 24/1808 (1%)
Strand=Plus/Plus
Query 1 AAGATCCTTTACATTTTCTTTTTGTATTTATCAAATATTTGTCATATTGTAGATTCTTAT 60
||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 12 AAGATCCTTTACATTTTCTTTAAGTCTTTATCAAATACTTGTCATATTGTAGATTCTTAT 71
Query 61 ATAGGTGTCTATATCCATATACATAAAGCTGTGTAATATGTAATCATAAGTTAGAGAAAC 120
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 72 ATAGGTGTCTATATACATGCACATAAAGCTGTGTAATATGTAATCATAAGTTAGAGAAAC 131
Query 121 AGATTTGGCTTTTCCTCTCTTGTTCTCTGTTGTGTCTTCTTCTTGGCATTTCCTCTATAA 180
|||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 132 AGATTTGGCTTTTCCTCTCTTGTTCTCTGTTGAGTATTCTTCTTGGCATCTCCTCTATAT 191
Query 181 TAAACCCTAAAGAGAAACAAAACAGAGAAACCTCTAAAGCTTTCTCTCtttttttCTAAT 240
||||| | ||||||||||||||||||||||||||||||||||||| | |||| |||| ||
Sbjct 192 TAAACTCGAAAGAGAAACAAAACAGAGAAACCTCTAAAGCTTTCT-T-TTTTGTTCTCAT 249
Query 241 GAAATTTTCTTGTCACAAACCAAACTCTATAAGAAAAAATCTTGTATACAAATCAACCAA 300
|| |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||
Sbjct 250 GACATTTTCTTGTCACAAACCAAACTCGAGAAGAAAAGTTCTTGTATACAAATCAACCAA 309
Query 301 CATTCATTGTTTTTAAAAGGGTCCCATGACCCATTTGTGGTGATAGCTTTGTTTTTATCT 360
||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 310 CATTCATTGTTTTTAAAAGGGTCCCATGACCCA-TTGTGGAGATAGCTTTGTTTTCATCT 368
Query 361 TCCAACATTAACACCCACCCCAAATTCTTGATTAACCTTTGATAGAAACATATGCAACAA 420
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 369 TCCAACATTAACACCCACCCCAAAATCTTGATT-ACTTTTGATAGAAACATATGCAACAA 427
Query 421 CTTGAATAATTCCAATACAGATAAGATCCACACAACAC-TTTTTCTCCTTCTATTCTCTT 479
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 428 GTGGAATAATTCCAATACAGATAAGATCCACACAACACTTTTTTCTCCTTCTATTCTCTT 487
Query 480 G-------T-ATT-T--TCTCAATGAAGATGCTTAGA-TTAAGGAAGAAGCAACATTTGG 527
| | ||| | |||| ||||||||||| ||| || || ||||||||||||||||
Sbjct 488 GTATCTTCTCATTATAGTCTCGATGAAGATGCTGAGACTT-AGAAAGAAGCAACATTTGG 546
Query 528 TGTTTTTACTATGTGTGTGGTGTTTGGTGGTGGATTTGAGCAAGGCAGAAACAGAGGAAA 587
||||| ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 547 TGTTTCTACTATGCGTGTGGTGTTTGGTGGTGGATTGGAGCAAAGCAGAAACAGAGGAAA 606
Query 588 GTGAAGGAGGTCCCATGGAGAAAACAGAGCAAGCTGCTCTATACTCTACCATTCAAGGCT 647
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GTGATGGAAGTCCCATGGAGAAAACAGAGCAAGCTGCTCTATACTCTACCATTCAAGGCT 666
Query 648 TTGTTGGTGAATCTTGGAATGGTTCTTATCTTTATCCTGACCCTTGTGGCTGGACTCCCA 707
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 667 TTGTTGGTGAATCTTGGAATGGCTCTTATCTTTATCCTGACCCTTGTGGCTGGACTCCTA 726
Query 708 TACAGGGTGTGACTTGTGATATGTATGATGATCTTTGGTATGTAACTGCTCTAAGCTTTG 767
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 727 TCCAGGGTGTGACTTGTGATATCTATGATGAGCTTTGGTATGTAACTGCTCTAAGCTTTG 786
Query 768 GGACTATGAAAGACAACTCTCTTGCTTGTTCTGAAATTCCAGTGATCAGACCACAACTCT 827
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 787 GGACTATGAAAGACAACTCTCTTGCTTGTTCTGAAAGTCCAGTGATCAGACCACAACTCT 846
Query 828 TTGAGCTCAAGCACCTCAAGTCCCTTTCTCTTTTCAACTGCTTCACATCGCCATA-CCGA 886
|||||||||||||||||||||| || ||||||||||||||||||||| |||| || ||||
Sbjct 847 TTGAGCTCAAGCACCTCAAGTCTCTCTCTCTTTTCAACTGCTTCACAACGCC-TAACCGA 905
Query 887 TATCTAGCTTCAATCTCGGATGAGAAGTGGTTGGATCTCTCTAAAAGCTTGGAGAGGCTT 946
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 906 TATCTAGCTTCAATCTCCGATGAAAAGTGGTTGGATCTCTCTAAAAGCTTGGAGAGACTT 965
Query 947 GAGATCAGATCAAACCCGGGACTGATAGGTGAACTTCCTTCTGTCATCACTAACCTCACC 1006
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 966 GAGATCAGATCAAACCCGGGACTGATAGGTGAACTCCCTTCTGTCATCACTAACCTCACC 1025
Query 1007 AACCTTCAATCTCTGGTGGTGCTAGAGAATCA-GTTAACAGGTCCATTGCCAGAGAATTT 1065
|||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct 1026 AACCTTCAATCTCTGGTGGTGCTAGAAAA-CAAGTTAACAGGTCCATTGCCAGTGAATTT 1084
Query 1066 GGCCAAGTTAACCAGATTGAGACGTTTAGTACTGTCTGGAAACCGGTTCACAGGGAGAAT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GGCCAAGTTAACCAGATTGAGACGTTTAGTACTGTCTGGAAACCGGTTCACAGGGAGAAT 1144
Query 1126 ACCGGAGGTCTACGGCTTAACCGGATTGTTGATATTGGATCTGAGCCGGAATTTCTTATC 1185
||| ||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1145 ACCTGAGGTCTACGGGTTAACCGGATTGTTGATATTGGATGTGAGCAGGAATTTCTTATC 1204
Query 1186 CGGTTCGTTGCCCTTAAGCATTGGAGGATTGGATTCTCTGCTGAAACTCGATCTTAGTAA 1245
|| ||||||| |||||| ||||||||||| |||||||||||||||| |||||||||||
Sbjct 1205 TGGGGCGTTGCCTTTAAGCGTTGGAGGATTGTATTCTCTGCTGAAACTTGATCTTAGTAA 1264
Query 1246 CAATTACTTGGAAGGAAAGTTACCTAGAGAGCTAGAGTCTTTAAAGAATCTGACTCTTTT 1305
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct 1265 CAATTACTTGGAAGGAAAGTTACCTAGAGAGCTAGAGTCCTTGAAGAATCTCACTCTATT 1324
Query 1306 GGACCTGAGAAACAACAGATTCTCAGGTGGATTGACTAAAGATATCCAAGAGATGACTTC 1365
|||| |||||||||||||||| |||||||| |||| |||||| |||||||||||||||||
Sbjct 1325 GGACTTGAGAAACAACAGATTATCAGGTGGGTTGAGTAAAGAGATCCAAGAGATGACTTC 1384
Query 1366 TTTGGTAGAACTGGTTCTGTCCAATAATCGCCTAGCCGGGGACTTGACAGGAATAGAGTG 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1385 TTTGGTAGAACTGGTTCTGTCCAATAATCGCCTAGCCGGGGACTTGACAGGAATAAAGTG 1444
Query 1426 GAGAAATCTGAAGAATTTAGTGGTTCTTGATCTCTCCAAAACAGGCTTAAAAGGGGAGAT 1485
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1445 GAGAAATCTGAAGAATTTAGTGGTTCTTGATCTCTCCAACACAGGCTTAAAAGGGGAGAT 1504
Query 1486 TCCTGGTTCAATCTTGGAGCTCAAGAAACTGAGGTTTTTGGGCTTGAGCAACAACAATCT 1545
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1505 TCCTGGTTCAATCTTGGAGCTCAAGAAACTGAGGTTTTTGGGTTTGAGCAACAACAATCT 1564
Query 1546 CGGAGGCAAACTCATTCCACAAATGGAAACTGAAATGCCTAGTCTCAGCGCGCTCTACGT 1605
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1565 CGGAGGCAAACTCATTCCACAAATGGAAACCGAAATGCCTAGTCTCAGCGCGCTTTACGT 1624
Query 1606 GAATGGAAATAACATCAGTGGAGAGCTGGAGTTCTCTAGAAAGTTCTATGAGAAGA-TGG 1664
|||||||||||||||||| |||||| |||| |||||||| | || ||||||| || |||
Sbjct 1625 GAATGGAAATAACATCAGCGGAGAGTTGGAATTCTCTAGGTACTTTTATGAGA-GAATGG 1683
Query 1665 GAAGGAGACTTGGTGTTTGGGGGAACCCTAACCTGTGTTACAACGGAAATGAGATCAAGA 1724
||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||
Sbjct 1684 GAAGGAGACTTGGTGTTTGGGGGAACCCTAATCTGTGTTACAACGGAGATGAGACCAAGA 1743
Query 1725 ACCTTAGCGATCATGTTCCTTTCGGAGTGAACCAGTGTAAGAGAATTAAGGCAGATAAAT 1784
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1744 ACCTTAGCGATCATGTTCCTTTCGGAGTGAACCAATGTAAGAGAATTAAGGCAGATAAAT 1803
Query 1785 ATTAGAAC 1792
||||||||
Sbjct 1804 ATTAGAAC 1811
Score = 56.5 bits (30), Expect = 9e-07
Identities = 35/37 (95%), Gaps = 1/37 (3%)
Strand=Plus/Plus
Query 1813 AATTTGGAAATGATACAAAGCTGTGGTCTTTTCAATT 1849
|| |||| |||||||||||||||||||||||||||||
Sbjct 1846 AACTTGG-AATGATACAAAGCTGTGGTCTTTTCAATT 1881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91515593535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5