BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476008
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2292 0.0
> AT1G68810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25861123-25863120 FORWARD
LENGTH=1511
Length=1511
Score = 2292 bits (1241), Expect = 0.0
Identities = 1422/1503 (95%), Gaps = 37/1503 (2%)
Strand=Plus/Plus
Query 1 AAActtttgtctctttttaactctcttaacttttgtttcttctcctaccttcttttacca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AAACTTTTGTCTCTTTTTAACTCTCTTAACTTTCGTTTCTTCTCCTACCTTCTTTTACCA 60
Query 61 acctttcctttcttttaCACACatatatatatatagagagagagagagagaATTGGAAAA 120
||||||||||||| ||||||||||||||||||| | | | |||||||||||| ||| ||
Sbjct 61 ACCTTTCCTTTCTCTTACACACATATATATATACATATATAGAGAGAGAGAAGAGGACAA 120
Query 121 AGAGTTGAAAGATGAAGACTCTCATGTCTTCATAGAAACAAGTGATATGTGCGC------ 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAGTTGAAAGATGAAGACTCTCATGTCTTCATAGAAACAAGTGATATGTGCGCTAAGAA 180
Query 175 ---A-AAG-A-AAGAAGAAGCAGAAGACAGTTCTGGAGCCATGAACAACATACAAAATTA 228
| ||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AGAAGAAGAAGAAGAAGAAGAAGAAGACAGTTCTGAAGCCATGAACAACATACAAAATTA 240
Query 229 CCAAAATGACCTCTTCTTTCACC-A---A---CTCATC-T---C-TCATCATCATGATCC 276
||||||||||||||||||||||| | | |||||| | | |||||||||||||||
Sbjct 241 CCAAAATGACCTCTTCTTTCACCAACTCATCTCTCATCATCACCATCATCATCATGATCC 300
Query 277 TTCTCAAACTGAAACCTTT-GGAGCATCCGGTAACGTCGGATCCGGATTCACTATCTTCT 335
||||||| |||||| |||| ||||||||||||||||| ||||| || |||||||||||||
Sbjct 301 TTCTCAATCTGAAA-CTTTGGGAGCATCCGGTAACGTTGGATCTGGTTTCACTATCTTCT 359
Query 336 CTCAAGATTCCGTCTCTCCAATATGGTCTCTACCTCCACCTACCTCGATCCAACCACCGT 395
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 CTCAAGATTCCGTCTCTCCAATATGGTCTCTACCTCCACCTACCTCGATCCAACCACCAT 419
Query 396 TTGATCAGTTTCCTCCTCCTTCTTCTTCTCCAGCATCTTTCTACGGAAGTTTCTTCAACA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTGATCAGTTTCCTCCTCCTTCTTCTTCTCCAGCATCTTTCTACGGAAGTTTCTTCAACA 479
Query 456 GAAGTCGAGCTCATCATCAGGGATTACAGTTCGGGTACGAGGGTTTTGGTGGAGCCACGT 515
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 GAAGTCGAGCTCATCATCAGGGATTACAGTTTGGGTACGAGGGTTTTGGTGGAGCCACGT 539
Query 516 CAGCAGCACATCATCATCATGAACAGCTTCGGATCTTGTCTGAAGCTTTAGGTCCTGTAG 575
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 540 CAGCAGCACATCATCATCATGAACAACTTCGGATCTTGTCGGAAGCTTTAGGTCCGGTAG 599
Query 576 TACAAGCCGGGTCCGGTCCTTTTGGGTTACAAGCTGAGTTAGGGAAGATGACAGCCCAAG 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 600 TACAAGCCGGGTCCGGTCCTTTTGGGTTACAAGCTGAGTTAGGGAAGATGACAGCACAAG 659
Query 636 AGATCATGGACGCTAAAGCTTTGGCTGCTTCAAAGAGTCATAGTGAAGCTgagagaagaa 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGATCATGGACGCTAAAGCTTTGGCTGCTTCAAAGAGTCATAGTGAAGCTGAGAGAAGAA 719
Query 696 gaagagagagaaTCAATAATCATCTCGCTAAGCTCCGTAGCATATTACCCAACACCACCA 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGAGAGAGAATCAATAATCATCTCGCTAAGCTCCGTAGCATATTACCCAACACCACCA 779
Query 756 AAACGGATAAAGCGTCGTTACTAGCTGAAGTGATCCAACATGTGAAAGAGTTGAAGAGAG 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAACGGATAAAGCGTCGTTACTAGCTGAAGTGATCCAACATGTGAAAGAGTTGAAGAGAG 839
Query 816 AGACTTCAGTGATCTCAGAGACAAATCTTATCCCAACGGAGAGCGATGAGTTAACGGTAG 875
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 840 AGACTTCAGTGATCTCAGAGACAAATCTTGTCCCAACGGAAAGCGATGAGTTAACGGTAG 899
Query 876 CTTTTACGGAGGAGGAAGAAACCGGAGATGGCAGATTTGTAATTAAAGCGTCGCTTTGCT 935
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTTTCACGGAGGAGGAAGAAACCGGAGATGGCAGATTTGTAATTAAAGCGTCGCTTTGCT 959
Query 936 GTGAAGACAGGTCGGATCTCTTGCCTGACATGATTAAAACATTGAAAGCAATGCGTCTCA 995
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 GTGAAGACAGGTCGGATCTCTTGCCTGACATGATTAAAACATTGAAAGCTATGCGTCTCA 1019
Query 996 AAACGCTCAAGGCGGAGATAACCACCGTTGGGGGACGAGTCAAGAACGTTTTGTTCGTCA 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1020 AAACGCTCAAGGCGGAGATAACCACCGTTGGGGGACGAGTCAAGAACGTTTTGTTTGTTA 1079
Query 1056 CCGGGGAAGAGAGCTCCGGTGAGGAAGTGGAGGAAGAGTACTGTATAGGGACGATAGAGG 1115
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1080 CCGGAGAAGAGAGCTCCGGTGAGGAAGTGGAGGAAGAGTACTGTATAGGGACGATTGAGG 1139
Query 1116 AAGCTTTGAAAGCGGTGATGGAGAAGAGCAATGTGGAGGAATTATCTTCTTCTGGAAATG 1175
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1140 AAGCTTTGAAAGCGGTGATGGAGAAGAGCAATGTAGAGGAATCATCTTCTTCTGGAAATG 1199
Query 1176 CTAAGAGACAGAGAATGAGTAGTCACAATACTATCACTATCGTTGAACAACAACAACAAC 1235
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1200 CTAAGAGACAGAGAATGAGTAGTCACAACACTATCACTATCGTCGAACAACAACAACAAT 1259
Query 1236 ATCATCAGAGGTAATCAATTTTT-ACTTAA-TCGCTTTCCTCTTT-TTATTTTCGGTGTA 1292
|| |||||||||||||||||||| |||||| ||||||| | ||| ||| ||||||||||
Sbjct 1260 ATAATCAGAGGTAATCAATTTTTTACTTAAATCGCTTTTTT-TTTCTTACTTTCGGTGTA 1318
Query 1293 TCTACTACGTGTGTGTTGTTTGATGGTTATGGAAATGAATGTTGTACGTCACGTTATACT 1352
|||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1319 TCTACTACGTGTGT-T-GTTTGCTGGTTATGGAAATGAATGTTGTACGTCACGTTATACT 1376
Query 1353 AAAGATATATGTGTGTTTGTGTGTATGTATAACGGA-GATATTTGTATCCGTTGGGGTCT 1411
| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 1377 ATAGATATATGTGTGTTTGTGTGTATGTATAACGGAAG-TATTTGTATCCGTTGTGGTCT 1435
Query 1412 TGGACTTTTGGTTTGCTTCTAAGATACTT-TTTTaaaaaaaTCTTGTATCGTTTAGTTGG 1470
||||||||||||||| ||||||||||||| |||| ||||| ||||||||||| ||||||
Sbjct 1436 TGGACTTTTGGTTTGGTTCTAAGATACTTATTTTTAAAAA--CTTGTATCGTTGAGTTGG 1493
Query 1471 TTT 1473
|||
Sbjct 1494 TTT 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5