BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476009
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68820.1 | Symbols: | Transmembrane Fragile-X-F-associated ... 2771 0.0
> AT1G68820.1 | Symbols: | Transmembrane Fragile-X-F-associated
protein | chr1:25865660-25868985 FORWARD LENGTH=1784
Length=1784
Score = 2771 bits (1500), Expect = 0.0
Identities = 1691/1780 (95%), Gaps = 26/1780 (1%)
Strand=Plus/Plus
Query 1 TTTCTCCGAGTCTGGAAAATGtctttttctctaaagaataaatctttttctc-t-tctc- 57
|||||||||||| |||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 4 TTTCTCCGAGTCGGGAAAATGTCTTTTTCTCGAAAGAATAAATCTTTTTCTCTTCTCTCT 63
Query 58 ----t----tcttgaaaatttccgcgaaaaatctcAACTTTTCCCTCTGAAATTTCCCCA 109
| |||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct 64 GTGTTACCCTCTTGAAATTTTCCGCGAAAAATCTCAACTTTTCCATCTGAAAACCCCCCA 123
Query 110 GAATCAAACAATTGGATCTTGATTTTGAGCTGTG-TTTGAGTGATTTAGAGGCTTAGGGT 168
||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||
Sbjct 124 AAATCAAACAATTGGATCTTGATTTTTAGCTGTGATTT-AGTGATTAAGAGGCTTAGGGT 182
Query 169 TTGTGGCGAAATGTTGGTACAGAGAAGAGTAATGAGTTGGAGAAGAGTCTGGAAGTCGTT 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TTGTGGCGAAATGTTGGTACAGAGAAGAGTAATGAGTTGGAGAAGAGTCTGGAAGTCGTT 242
Query 229 TCAAGCGGCCTCTGCGCACTGTTTACTCTTCTCCTTCACGCTTCTTCTTGCTTTGAAGCT 288
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 243 TCAAGCGGCTTCTGCGCATTGTTTACTCTTCTCCTTCACGCTTCTTCTCGCTTTGAAGCT 302
Query 289 TGATCATGTTGTTTCTCATTCATGGTGGTTTATATTTACACCCTTGTGGTTGTTTCATGC 348
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 303 TGATCATGTTGTTTCTCATTCATGGTGGTTTGTATTTGCACCCTTGTGGTTGTTTCATGC 362
Query 349 TGTGATTGCTCGTGGTAGATTTTCATTGCCTGCTCCATCAATGCCTCATGATCGACATTG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TGTGATTGCTCGTGGTAGATTTTCATTGCCTGCTCCATCAATGCCTCATGATCGACATTG 422
Query 409 GGCTCCTTTTCATTCGGTGATGGCAACACCGCTGCTTGTTGCCTTTGAGATCCTTCTCTG 468
|||||||||||| ||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 423 GGCTCCTTTTCACTCGGTTATGGCAACACCACTTCTTGTTGCTTTTGAGATCCTTCTCTG 482
Query 469 TGTACATCTTGAAGATAAATATGTTGTTGACTTAAAGATTGTCTTCCTACCGTTGCTTGC 528
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 483 TGTACATCTTGAAGATAAATATGTTGTTGACTTAAAGATTGTCTTTCTACCGTTGCTTGC 542
Query 529 ATTTGAGGTAGCAATTTTGATAGATAATGTCAGAATGTGCAGGACACTCATGCCTGGAGA 588
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 543 ATTTGAGGTAGCAATTTTGATAGATAATGTCAGAATGTGCAGGACGCTCATGCCTGGAGA 602
Query 589 TGAGGAAACTATGAGTGATGAAGCCATATGGGAAACACTTCCTCATTTCTGGGTTTCCAT 648
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TGAAGAAACTATGAGTGATGAAGCCATATGGGAAACACTTCCTCATTTCTGGGTTTCCAT 662
Query 649 ATCTATGGTATTCTTCATTGCCGCGACAACCTTCACTCTTCTTAAATTATGTGGTGACGT 708
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 663 ATCTATGGTTTTCTTCATTGCCGCAACAACCTTCACTCTTCTTAAATTATGTGGTGACGT 722
Query 709 AGCTGCGTTGGGATGGTGGGACTTATTTATAAACTTCGGAATAGCAGAGTGCTTTGCGTT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 AGCTGCGTTGGGATGGTGGGACTTATTTATAAACTTCGGAATAGCAGAGTGCTTTGCGTT 782
Query 769 TCTTGTCTGTACAAAGTGGAGCAATCAGTCAATTCATAGGTATTCACATATACCGGAACC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TCTTGTCTGTACAAAGTGGAGCAATCAGTCAATTCATAGGTATTCACATATACCGGAACC 842
Query 829 TAGCTCATCTTCAATGATAGTAAGATATCTGGATTGGAACAGAGGTCTAGTAGTAACCGC 888
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TAGCTCATCTTCAATGGTAGTAAGATATCTGGATTGGAACAGAGGTCTAGTAGTAACCGC 902
Query 889 TGACGACGAGCATCAGCAAAGCAACAGAATATGCGGTCTCCAAGATATTGGTGGACATGT 948
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 903 TGACGACGAGCATCAGCAAAGCAACAGAATATGTGGTCTCCAAGATATTGGTGGACATGT 962
Query 949 TATGAAAATTCCATTCGTTACCTTTCAAATTATCCTTTTCATGCGCTTAGAGGGAACGCC 1008
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 963 TATGAAAATTCCATTTGTGACCTTTCAAATCATCCTTTTCATGCGCTTAGAGGGAACGCC 1022
Query 1009 CGCTTCTGCCAAAAACATTCCGATTTTAGTTCTGTTTGTACCTCTTTTTCTGCTACAAGG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1023 AGCTTCTGCCAAAAACATTCCGATTTTAGTTCTGTTTGTACCTCTTTTTCTGTTACAAGG 1082
Query 1069 AGCTGGGGTACTTTTTGCTACATATAGATTGGTTGAGAAATCAGTCTTATTGATAAATAG 1128
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1083 AGCTGGGGTACTTTTTGCTATGTATAGATTGGTTGAGAAATCAGTCTTATTAATAAATAG 1142
Query 1129 TGGTAGTGGTTCTTATGGAAGATATTTTACCGCAACATCATCAGCTCGTGAGTACCTGGG 1188
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1143 TGGTAGTGGTTCTTATGGAAGATATTTTACCGCAACATCATCAGCTCGTGAATTCCTGGG 1202
Query 1189 ATTCTTTCAACATGGTGCAAGATTACTTGGCTGGTGGTCTATCGATGAAGGTAGTCGGGA 1248
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1203 ATTCTTTCAACATGGTGCAAGATTACTTGGCTGGTGGTCTATCGATGAAGGAAGTCGGGA 1262
Query 1249 AGAACAAGCTAGGCTCTACTCAGGAGAAGCTACTGGGTACAACACCTTCTCACCAGAGGT 1308
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1263 AGAACAAGCAAGGCTCTACTCTGGAGAAGCTACTGGATACAACACCTTCTCACCAGAGGT 1322
Query 1309 TGTGAAGAAAATGCCAAAGTCTGATCTTGTTGAAGAGATATGGAGACTCCAAGCTGCATT 1368
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1323 TGTGAAGAAAATGCCAAAGTCTGATCTTGTTGAAGAGATATGGAGACTTCAAGCTGCATT 1382
Query 1369 GAGTGAGCAAACAGATATCACCAATTATAGCCAGCAAGAGTACGAAAGACTTCAAAACGA 1428
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1383 GAGTGAGCAAACAGATATCACCAGTTATAGCCAGCAAGAGTACGAAAGGCTTCAAAACGA 1442
Query 1429 GAAGATTCTTTGCAGAGTTTGCTTTGAAGATCCCATCAATGTGGTTTTACTCCCATGTAA 1488
|||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||
Sbjct 1443 GAAGATTCTTTGTAGAGTTTGCTTTGAAGATCCGATCAACGTGGTTCTACTCCCATGTAG 1502
Query 1489 ACATCATGTCCTCTGCAGTACGTGCTGCGAGAAATGCAAGAAATGTCCGATTTGTCGTGT 1548
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1503 ACATCACGTCCTCTGCAGTACATGCTGCGAGAAATGCAAGAAATGTCCGATTTGTCGTGT 1562
Query 1549 CCTGATCGAGGAGCGTATGCCTGTATACGATGTGTAGATTTCCAGAGCACTAATCCATAA 1608
|||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| ||
Sbjct 1563 CCTGATCGAGGAGCGTATGCCTGTATACGATGTGTAGATTTC-AGAGCTCCAATCCAGAA 1621
Query 1609 ATGAAGAACATATTTCTTGCTTGTTTGGTTTTGTTTTAGTAATGAAGCAAGCACT-TATA 1667
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1622 ATGAAGAATACATTTCTTGCTTGTTTGGTTTTGTTTTAGTAATGAAGCAAGCACTATATA 1681
Query 1668 TATATATGTTACAACTTGCATAGGAAAA-TCCAAAT--GT----G-G---ATGTACATAA 1716
|||||||||||||||||||||||||||| | | || || | | ||||| ||||
Sbjct 1682 TATATATGTTACAACTTGCATAGGAAAAATTCTGATTCGTTTTCGAGTGGATGTAAATAA 1741
Query 1717 TATTGTAATCCATCGTATATGTCATGAATCTTCTCTCTCT 1756
|| ||||| ||||||||||||||||||||||||| |||||
Sbjct 1742 TACTGTAAACCATCGTATATGTCATGAATCTTCTTTCTCT 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86846942850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5