BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476011
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68840.1 | Symbols: RAV2, RAP2.8, TEM2, EDF2, AtRAV2 | relat... 1868 0.0
AT1G25560.1 | Symbols: TEM1, EDF1 | AP2/B3 transcription factor... 573 1e-162
> AT1G68840.1 | Symbols: RAV2, RAP2.8, TEM2, EDF2, AtRAV2 | related
to ABI3/VP1 2 | chr1:25880327-25881736 FORWARD LENGTH=1410
Length=1410
Score = 1868 bits (1011), Expect = 0.0
Identities = 1129/1185 (95%), Gaps = 11/1185 (1%)
Strand=Plus/Plus
Query 1 GTAACAACGTCACCAAAATCTCTCTCACCTAATTTGTGTTACTTCTTTCTGTTAAAAGGT 60
|||||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 1 GTAACAACGTCACCTAAATCTCTCTCACCCAATTTGTGTTTCTTCTTTCTGCTAAAAGGT 60
Query 61 TATAATTTGTGTTTCTTGGTTTGGTGAGAATCTTCAAGAAACAGAAAC-AA-AAAATGGA 118
|||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 61 TATAATTTTTGTTTCTTGGTTTGGTGAGAATCTTCAAGAAACTGAAACAAAGAAAATGGA 120
Query 119 TTCCAGTTGCATAGACGAGATAAGTTCCTCCACTTCAGAATCTTTCTCAGCCACCGCCAC 178
||| |||||||||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 121 TTCTAGTTGCATAGACGAGATAAGTTCCTCCACTTCAGAATCTTTCTCCGCCACCACCGC 180
Query 179 CTTG--TCTCTTCCTTCTCATCCGGCTGCGGCGTTACGCCTCTACCGGATGGGAAGTGGC 236
| | ||| | || ||| ||| || ||||||||||||||||||||||||||||| |||
Sbjct 181 CAAGAAGCTC-T-CTCCTCCTCCCGCGGCGGCGTTACGCCTCTACCGGATGGGAAGCGGC 238
Query 237 GGAAGTAGCGTCGTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCA 296
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGGAGCAGCGTCGTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCA 298
Query 297 TCGTCAAAATACAAAGGTGTGGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTAC 356
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCTTCAAAATACAAAGGTGTTGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTAC 358
Query 357 GAGAAACACCAACGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGCTCGTTCC 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAGAAGCACCAACGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGCTCGTTCC 418
Query 417 TACGACATCGCCGCTCGTAGATTCCGTGGCCGCGACGCCGTCGTCAACTTCAAGAACGTT 476
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TACGACATCGCAGCTTGTAGATTCCGTGGCCGCGACGCCGTCGTCAACTTCAAGAACGTT 478
Query 477 CTGGAAGACGGTGATTTAGCTTTTCTTGAAGCTCACTCTAAGGCCGAGATCGTGGATATG 536
||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 479 CTGGAAGACGGCGATTTAGCTTTTCTTGAAGCTCACTCAAAGGCCGAGATCGTCGACATG 538
Query 537 TTGAGAAAACACACTTACGCCGACGAGCTTGAACAAAACAATAAACGGCGGTTGTTTCTC 596
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 539 TTGAGAAAACACACTTACGCCGACGAGCTTGAACAGAACAATAAACGGCAGTTGTTTCTC 598
Query 597 TCCGTCGACGTTAACGGAAAACGTAACGGATCGAGTACAACTCAAAACGA-AAACGTTTT 655
|||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 599 TCCGTCGACGCTAACGGAAAACGTAACGGATCGAGTACTACTCAAAACGACAAA-GTTTT 657
Query 656 AAAGACGCGTGAAGTTCTTTTCGAGAAGGCTGTTACACCTAGCGACGTCGGGAAGCTAAA 715
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 658 AAAGACGCGTGAAGTTCTTTTCGAGAAGGCTGTTACACCTAGCGACGTTGGGAAGCTAAA 717
Query 716 CCGTCTCGTGATACCTAAACAACACGCGGAGAAACACTTTCCGTTACCGTCACCGTCACC 775
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 718 CCGTCTCGTGATACCTAAACAACACGCCGAGAAACACTTTCCGTTACCGTCACCGTCACC 777
Query 776 GGCAGTGACTAAAGGCGTTTTGATCAACTTCGAAGACGTTAACGGCAAAGTGTGGAGGTT 835
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 778 GGCAGTGACTAAAGGAGTTTTGATCAACTTCGAAGACGTTAACGGTAAAGTGTGGAGGTT 837
Query 836 CCGTTACTCATACTGGAACAGTAGTCAAAGTTACGTGTTGACCAAGGGATGGAGTCGATT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CCGTTACTCATACTGGAACAGTAGTCAAAGTTACGTGTTGACCAAGGGATGGAGTCGATT 897
Query 896 CGTCAAGGAGAAGAATCTCCGAGCCGGTGATGTTGTTACTTTCGAGAGATCGACCGGACT 955
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CGTCAAGGAGAAGAATCTTCGAGCCGGTGATGTTGTTACTTTCGAGAGATCGACCGGACT 957
Query 956 AGACCGGCAGCTT-TATATTGATTGGAAAGTCCGATCCGGTCCGAGGGAAAACCCGGTTC 1014
||| |||||| || ||||||||||||||||| || || |||||||| |||||||||||||
Sbjct 958 AGAGCGGCAG-TTATATATTGATTGGAAAGTTCGGTCTGGTCCGAGAGAAAACCCGGTTC 1016
Query 1015 AGGTGGTGGTTCGGCTTTTCGGAGTTGATATCTTTAATGTGACTACCGTGAAGCCAAACG 1074
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1017 AGGTGGTGGTTCGGCTTTTCGGAGTTGATATCTTTAATGTGACCACCGTGAAGCCAAACG 1076
Query 1075 ACGTCGTAGCCGTTTGCGGTGGAAAGAGATCTCGAGATGTTGATGATATGTTTGCGTTAC 1134
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ACGTCGTGGCCGTTTGCGGTGGAAAGAGATCTCGAGATGTTGATGATATGTTTGCGTTAC 1136
Query 1135 GGTGTTCCAAGAAGCAGGCGATAATCAATGCTTTGTGACAT-TTT 1178
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1137 GGTGTTCCAAGAAGCAGGCGATAATCAATGCTTTGTGACATATTT 1181
Score = 259 bits (140), Expect = 5e-68
Identities = 169/183 (92%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 1175 TTTTGTCAAGTTGTGTAGGTTGTGATTCTTGCTAAGTTGTATTTAGGAAAATAGGACAAG 1234
|||||||||||||||||||||||||||| ||||| |||||||||||||||| || | |||
Sbjct 1221 TTTTGTCAAGTTGTGTAGGTTGTGATTCATGCTAGGTTGTATTTAGGAAAAGAG-ATAAG 1279
Query 1235 ACCaaaaaataaactgaaaaaaaTGGTTTTGTGGAAAAGTGGTAAGTAGACCTACCTCAT 1294
||||||||||||| || || || |||||||||||||||||||||| ||||||||||||||
Sbjct 1280 ACCAAAAAATAAATTGGAACAA-TGGTTTTGTGGAAAAGTGGTAAATAGACCTACCTCAT 1338
Query 1295 AATAAAACGTTACCGGATACAACCTAGATGTGTATCCGTCCCTAAAACTAGATGAATCAA 1354
| |||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||
Sbjct 1339 AGTAAAACGTTACCGGATACAACCTAAATGTTTATCCGTTCCTAAAACTAGATGAATCAA 1398
Query 1355 ATT 1357
|||
Sbjct 1399 ATT 1401
> AT1G25560.1 | Symbols: TEM1, EDF1 | AP2/B3 transcription factor
family protein | chr1:8981677-8983041 REVERSE LENGTH=1365
Length=1365
Score = 573 bits (310), Expect = 1e-162
Identities = 798/1020 (78%), Gaps = 88/1020 (9%)
Strand=Plus/Plus
Query 190 CTTCTCATCCGGCTG-CGGCGTTACGCCTCTACCGGATGGGAAGTGGCGGAAGTAGCGTC 248
|||||| ||||| | || || | || |||||| | |||||||| |||||||| ||||||
Sbjct 163 CTTCTCCGCCGGC-GACGTCGATGCGTCTCTACAGAATGGGAAGCGGCGGAAGCAGCGTC 221
Query 249 GTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCATCGTCAAAATAC 308
|| |||||| | ||||||||| | ||||| |||||||| ||||| || ||||| |||||
Sbjct 222 GTTTTGGATTCAGAGAACGGCGTCGAGACCGAGTCACGTAAGCTTCCTTCGTCGAAATAT 281
Query 309 AAAGGTGTGGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTACGAGAAACACCAA 368
||||| || || |||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 282 AAAGGCGTTGTGCCTCAGCCTAACGGAAGATGGGGAGCTCAGATTTACGAGAAGCATCAG 341
Query 369 CGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGC-TCGTTCCTACGACATCGC 427
||||| |||||||| |||||||||||| ||||||||||||| || ||| |||||||||||
Sbjct 342 CGAGTTTGGCTCGGTACTTTCAACGAGGAAGAAGAAGCTGCGTC-TTCTTACGACATCGC 400
Query 428 CGCTC-GTAGATTCCGTGGCCGCGACGCCGTCG-TCAACTTCAAG----AACGTTC-TGG 480
|| | | |||||||| ||||||||||||||| | |||||||| || ||| |||
Sbjct 401 CG-TGAGGAGATTCCGCGGCCGCGACGCCGTCACT-AACTTCAAATCTCAA-GTTGATGG 457
Query 481 AA--GACGGTGATTTAGCTTTTCTTGAAGCTCACTCTAAGGCCGAGATCGTGGATATGTT 538
|| |||| || | ||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct 458 AAACGACGCCGAATCGGCTTTTCTTGACGCTCATTCTAAAGCTGAGATCGTGGATATGTT 517
Query 539 GAGAAAACACACTTACGCCGACGAGCTTGAACAAAACAATAAACGGCGGTTGTTTCTCTC 598
||| ||||||||||||||||| ||| |||| || | || |||| ||| | | | |
Sbjct 518 GAGGAAACACACTTACGCCGATGAGTTTGAGCAGAG---TAGACGGAAGTT-TGT-TAAC 572
Query 599 CGTCGACGTTAACGGAAAACG-TAACGGATCGAGTACA---AC-T-CA-AAACGAAAAC- 650
| | || | ||||||||| | || | ||| || || | | |||||| |
Sbjct 573 -G--G-CG--A-CGGAAAACGCTCTGGGTTGGAG-ACGGCGACGTACGGAAACGACG-CT 623
Query 651 GTTTTAA-AGACGCGTGAAGTTCTT-TTCGAGAAGGCTGTTACACCTAGCGACGTCGGGA 708
||||| | || ||||||| ||| || ||||||||| ||||||| || |||||||||||||
Sbjct 624 GTTTTGAGAG-CGCGTGAGGTT-TTGTTCGAGAAGACTGTTACGCCGAGCGACGTCGGGA 681
Query 709 AGCTAAACCGTCTCGTGATACCTAAACAACACGCGGAGAAACACTTTCCGTTACCGTC-A 767
|||| |||||| | |||||||| ||||||||||||||||| || |||||||||||| | |
Sbjct 682 AGCTGAACCGTTTAGTGATACCGAAACAACACGCGGAGAAGCATTTTCCGTTACCGGCGA 741
Query 768 ---C--CGTC-ACCGGCA-G--T--GACT---A--AA-GGCGTTTTGATCAACTTCGAAG 810
| || | | || | | | | || | || ||||||||||| ||||| ||||
Sbjct 742 TGACGACGGCGATGGGGATGAATCCGTCTCCGACGAAAGGCGTTTTGATTAACTTGGAAG 801
Query 811 AC-GTTAAC-GGCAAAGTGTGGAGGTTCCGTTACTCATACTGGAACAGTAGTCAAAGTTA 868
| | ||| || ||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 802 ATAG--AACAGGGAAAGTGTGGCGGTTCCGTTACAGTTACTGGAACAGCAGTCAAAGTTA 859
Query 869 CGTGTTGACCAAGGGATGGAGTCGATTCGTCAAGGAGAAGAATCTCCGAGCCGGTGATGT 928
||||||||||||||| ||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct 860 CGTGTTGACCAAGGGCTGGAGCCGGTTCGTTAAAGAGAAGAATCTTCGAGCCGGTGATGT 919
Query 929 TGTTACTTTCGAGAGATCGACCGGACTAGACCGGCAGCTT-TATATTGATTGGAAAGTCC 987
||| |||||||||||| ||||||| ||||||||| || ||||| | ||||||||||
Sbjct 920 GGTTTGTTTCGAGAGATCAACCGGACCAGACCGGCAA-TTGTATATCCACTGGAAAGTCC 978
Query 988 GATCCGGTCCGAGGGAAAACCCGGTTCAGG-TGGTGGTTCGGCTTTTCGGAGTTGATATC 1046
| || | || || ||||||| || ||||| |||| |||||||| | ||
Sbjct 979 GGTC---T---AGT-----CC-GGTTCAGACTG-TGGTTAGGCTATTCGGAGTCAACAT- 1024
Query 1047 TTT-AATGTGACTACCGTGAAGCCAAACGACGTCGTAGCCGTTTGCGGTGG-AA-A-GAG 1102
||| ||||||| || || ||| ||||||||||||| || | || | ||| || | |||
Sbjct 1025 TTTCAATGTGAGTAACGAGAAACCAAACGACGTCGCAGTAGAGTGTGTTGGCAAGAAGAG 1084
Query 1103 ATCTCGAGATGTTGATGATATGTTTGCGTTACGGTGTTCCAAGAAGCAGGCGATAATCAA 1162
|||||| || | |||| | ||||| ||||| |||||||||||||||||||||| |||||
Sbjct 1085 ATCTCGGGAAGATGAT--T-TGTTTTCGTTAGGGTGTTCCAAGAAGCAGGCGATTATCAA 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66816925395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5