BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476012
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68850.1 | Symbols: | Peroxidase superfamily protein | chr1... 1698 0.0
AT3G50990.1 | Symbols: | Peroxidase superfamily protein | chr3... 65.8 9e-10
> AT1G68850.1 | Symbols: | Peroxidase superfamily protein | chr1:25883616-25885247
REVERSE LENGTH=1271
Length=1271
Score = 1698 bits (919), Expect = 0.0
Identities = 1066/1136 (94%), Gaps = 14/1136 (1%)
Strand=Plus/Plus
Query 1 ATATTTTCCCAAAATTTGGATCAAAAAGGTTTCCGATAGAAG------AA-CT-ATGAGA 52
|||||||||||||||||||||||||||| ||||||||||||| || | ||||||
Sbjct 20 ATATTTTCCCAAAATTTGGATCAAAAAGTTTTCCGATAGAAGAAATTAAATATGATGAGA 79
Query 53 CTCCTCCTTGTGTTCTTTATGGTTCTCGCCATCTTTATCCCCTGCTTTTCCTTTGATATA 112
|||||| |||| ||||| ||||||| | ||||||||||||| |||||||||||||||| |
Sbjct 80 CTCCTCTTTGTATTCTTCATGGTTCACACCATCTTTATCCCATGCTTTTCCTTTGATACA 139
Query 113 CCGGGAAAGGATCTTCCTTTAATCCTAGATTATTACAAGTCTACTTGCCCAACCGTATTT 172
||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 140 CCGGGGAAGGATCTTCCTTTAACCCTAGATTATTACAAGTCTACTTGTCCAACCGTATTT 199
Query 173 GACGTCATCAAGAAAGAAATGGAATGCATTGTGAAGGAAGATCCTCGAAATGCAGCCATA 232
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 200 GACGTCATCAAGAAAGAAATGGAATGCATAGTGAAGGAAGATCCTAGAAATGCAGCCATA 259
Query 233 ATTATTCGT-TTACACTTCCACGATTGCTTTGTCCAAGGATGCGATGGATCGGTGTTGCT 291
||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 260 ATTATTCGTCTT-CACTTCCACGACTGCTTTGTCCAAGGATGTGATGGATCGGTGTTGCT 318
Query 292 AGACGAAACAGAGTCACTACAGGGAGAGAAAAAAGCTTCTCCCAACATAAACTCATTGAA 351
|||||| ||||| | |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 319 AGACGAGACAGAAACTCTACAGGGAGAGAAGAAAGCTTCTCCCAACATAAATTCATTGAA 378
Query 352 AGGATACAAAATTATAGACAGAATCAAGAACATAATCGAATCCGAATGCCCTGGAGTTGT 411
||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 379 AGGATACAAAATTGTCGACAGAATCAAGAACATAATCGAATCCGAATGTCCTGGAGTTGT 438
Query 412 TTCATGCGCTGATCTCCTCACAATTGGTGCTAGAGATGCTACAATCCTGGTGGGTGGGCC 471
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TTCATGCGCTGATCTTCTCACAATTGGTGCTAGAGATGCTACAATCCTGGTGGGTGGGCC 498
Query 472 TTACTGGGATGTTCCTGTGGGAAGAAAAGATTCAAAAACAGCAAGTTACGAGCTTGCCAC 531
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 499 TTACTGGGATGTTCCTGTGGGAAGAAAAGATTCAAAAACCGCAAGCTACGAGCTTGCCAC 558
Query 532 AACAAACCTTCCAACTCCAGAAGAGGGTTTGATCAGCATCATTGCTAAGTTCTACTCTCA 591
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 559 AACAAACCTTCCAACTCCAGAAGAGGGTTTAATCAGCATCATTGCTAAGTTCTATTCTCA 618
Query 592 AGGTCTCTCTGTTGAAGACATGGTCGCTCTTATAGGAGCGCACACGATTGGAAAGGCACA 651
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 619 AGGTCTCTCGGTTGAAGACATGGTCGCTCTTATAGGAGCGCACACGATCGGAAAAGCACA 678
Query 652 ATGTCGGAACTTCCGATCCCGGATCTATGGAGATTTTCAGGTGACGTCAGCCCTAAATCC 711
|||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 679 ATGTCGCAACTTCCGATCCCGAATTTATGGAGATTTTCAAGTGACGTCAGCCCTAAATCC 738
Query 712 AGTTTCGGAGACGTACTTGGCAAGTCTTCGAGAGATTTGTCCTGCAAGCAGCGGAGAAGG 771
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 739 AGTTTCGGAGACGTACTTGGCAAGTCTTCGAGAGATTTGTCCGGCGAGTAGCGGAGAAGG 798
Query 772 TGATAGCAATGTGACAGCAATGGACAATGTGACGCCAAATCTCTTTGATAACTCGATCTA 831
|||||| || ||||| || || |||||||||||||| |||||||| ||||||||||||||
Sbjct 799 TGATAGTAACGTGACGGCGATAGACAATGTGACGCCGAATCTCTTCGATAACTCGATCTA 858
Query 832 CCACACACTGCTAAGAGGAGAAGGGTTACTGAATTCGGACCAGGAGATGTACACGAGCTT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CCACACACTGCTAAGAGGAGAAGGGTTACTGAATTCGGACCAGGAGATGTACACGAGCTT 918
Query 892 GTTCGGGATACAAACGCGGCGGATCGTGAGCAAGTATGCGGAGGATCCAGTGGCTTTCTT 951
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 919 GTTCGGGATACAAACGCGGCGAATCGTGAGCAAGTATGCGGAGGATCCAGTGGCTTTCTT 978
Query 952 TGAGCAATTCTCGAAGTCGATGGTGAAGATGGGGAACATTTTGAACTCTGAAAGCTTTGC 1011
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 979 CGAGCAATTCTCGAAGTCGATGGTAAAGATGGGGAACATTTTGAACTCTGAAAGCTTGGC 1038
Query 1012 TGATGGAGAAGTTAGAAGAAATTGCCGATTTGTCAATACATGAAACATCAACAACGAAAC 1071
||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 1039 TGATGGAGAAGTTAGAAGAAATTGCAGATTTGTGAATACATGATTCATCAACAACGAAAC 1098
Query 1072 -AAAACAATGGAGAAA-TAAACTATTTCTGATCTTTATTTATATAAGaaa-aaaaa 1124
|||| |||||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 1099 TAAAA-AATGGAGAAAATAATCTATTTCTGATCTTTATTTATATAAGAAAGAAAAA 1153
> AT3G50990.1 | Symbols: | Peroxidase superfamily protein | chr3:18943135-18944811
FORWARD LENGTH=1261
Length=1261
Score = 65.8 bits (35), Expect = 9e-10
Identities = 42/45 (93%), Gaps = 2/45 (4%)
Strand=Plus/Plus
Query 947 TTCTTTGAGCAATTCT-CGAAGTCGATGGTGAAGATGGGGAACAT 990
||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 945 TTCTTTGAGCAGTT-TGCGAAGTCGATGGTGAAGATGGGGAACAT 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58383233835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5