BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476013

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68870.1 | Symbols: ATSOFL2, SOFL2 | SOB five-like 2 | chr1:...   737    0.0  


> AT1G68870.1 | Symbols: ATSOFL2, SOFL2 | SOB five-like 2 | chr1:25889081-25889734 
FORWARD LENGTH=654
Length=654

 Score =  737 bits (399),  Expect = 0.0
 Identities = 468/498 (94%), Gaps = 17/498 (3%)
 Strand=Plus/Plus

Query  1    TTTTGTGTTAGCCATGGAGTCTCCAAGAATTCATGGAGGTGCTGAGGAGAAGAGTAGTTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  24   TTTTGTGTTAGCCATGGAGTCTCCAAGAATTCATGGAGGTGCTGAGGAGAAGAGTAGTTG  83

Query  61   TGAATCAGGATGGACCATGTACATAGAAGACA-CTTTCCATGGAAACCACCACTCTGAAG  119
             ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct  84   CGAATCAGGATGGACCATGTACATAGAAGACACCTTT-CATGGAAACCACCACTCTGAAG  142

Query  120  TTGTTTatgaagatgatgatgatggtgatgatggtttctgtgtaaaagaggtcgatgat-  178
            |||||||||||||  | ||  |    ||||||||||||| |||||||||||| |||||| 
Sbjct  143  TTGTTTATGAAGA--A-GA--A----GATGATGGTTTCTCTGTAAAAGAGGTAGATGATG  193

Query  179  a-ag-gatgatgatg--g-tgatggtgatgaagacgatgatgatAGTAGTAACAATGAGA  233
            |  | |||| |||||  | ||||| |||||| || ||||||||||||||||||||||| |
Sbjct  194  ATGGTGATGGTGATGAAGATGATGATGATGACGATGATGATGATAGTAGTAACAATGAAA  253

Query  234  GCGATGACTCAATGACTTCGGATGCATCCTCATGGCCTAGCACTCATCAGCCTCCAAGGA  293
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  254  GCGATGACTCAATGACTTCTGATGCATCCTCATGGCCTAGCACTCATCAGCCTCCAAGGA  313

Query  294  GCACCAAGAATCATGCAGCTGCAAAGAATAGTAATGCCAAACAAGTCAATCATCAGACAA  353
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  314  GCACCAAGAATCATGCAGCTGCAAAGAATAGTAATGCCAAACAAGTCAATAATCAGACAG  373

Query  354  AGAACAGAGTTCGTGACAGATTCAGCGATGAAGGAGAGGAATCTGAGCTCAAGGCCAGAA  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  374  AGAACAGAGTTCGTGACAGATTCAGCGATGAAGGAGAGGAATCTGAGCTCAAGGCTAGAA  433

Query  414  CAAGAACCACTGCAGCTAGTCGTGTCAAGGTGAGCAAAACCAAATAAGACTCATACTGGT  473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  434  CAAGAACCACTGCAGCTAGTCGTGTCAAGGTGAGCAAAACCAAATAAGACTCATACTGGT  493

Query  474  TTTAGTTTCTATATCTAT  491
            ||||||||||||||||||
Sbjct  494  TTTAGTTTCTATATCTAT  511


 Score =  167 bits (90),  Expect = 1e-40
 Identities = 90/90 (100%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  492  ATACAGAATTCAGACCATGTAGTTGTTTCTACCTTCATTTGAGATGTATGTGTAATTGCA  551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  558  ATACAGAATTCAGACCATGTAGTTGTTTCTACCTTCATTTGAGATGTATGTGTAATTGCA  617

Query  552  TTGCTTTCTTTAAAACAGGATTATGTTTTT  581
            ||||||||||||||||||||||||||||||
Sbjct  618  TTGCTTTCTTTAAAACAGGATTATGTTTTT  647



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27930185732


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5