BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476015

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68880.1 | Symbols: AtbZIP, bZIP | basic leucine-zipper 8 | ...   555    1e-157


> AT1G68880.1 | Symbols: AtbZIP, bZIP | basic leucine-zipper 8 
| chr1:25894237-25894961 REVERSE LENGTH=725
Length=725

 Score =  555 bits (300),  Expect = 1e-157
 Identities = 360/390 (92%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTGGTTTTGTCTATAACCTTCCATGTGAAAACCCTAATCCAAAGTCTTTATTCCAA  60
            |||||||||| |||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct  47   ATGGCTGGTTCTGTCTATAACCTTCCAAGTCAAAACCCTAATCCACAGTCTTTATTCCAA  106

Query  61   ACCTTTGTTGATCGAGTTCCACTTTTAAACTTTCCTGCCACGTCCGAGGACTCTAGCCGG  120
            | ||||||||||||||| ||||||| |||||| ||||||||||| || ||||||||||||
Sbjct  107  ATCTTTGTTGATCGAGTACCACTTTCAAACTTGCCTGCCACGTCAGACGACTCTAGCCGG  166

Query  121  AATGCAGAAGATGATGAGCGGAAGCGGAGAAGGAAGGTATCGAACCGCGAGTCAGCTAGG  180
            | |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  167  ACTGCAGAAGATAATGAGAGGAAGCGGAGAAGGAAGGTATCGAACCGCGAGTCAGCTCGG  226

Query  181  AGATCACGTATGCGGAAACAGCGCCACATGGACGAACTGTGGTCCATGCTTGTTCAGCTC  240
            ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct  227  AGATCGCGTATGCGGAAACAGCGTCACATGGAAGAACTGTGGTCCATGCTTGTTCAACTC  286

Query  241  ATCAACAAGAACAAATGTCTAGTCGATGAGCTAAGCCGAGCCAGGGAGGGTTACGAGAAG  300
            ||||| |||||||||| |||||||||||||||||||| |||||||||  |||||||||||
Sbjct  287  ATCAATAAGAACAAATCTCTAGTCGATGAGCTAAGCCAAGCCAGGGAATGTTACGAGAAG  346

Query  301  GTTATAGAAGAGAACATGAAACTTCGAGAAGAAAATTCCAAGTCGAGGGAGACGATTGGT  360
            ||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||
Sbjct  347  GTTATAGAAGAGAACATGAAACTTCGAGAGGAAAACTCCAAGTCGAGGAAGATGATTGGT  406

Query  361  GAGATCGGGCTTAATTGGTTTCCTAACGTA  390
            ||||||||||||||| |||||| || ||||
Sbjct  407  GAGATCGGGCTTAATAGGTTTCTTAGCGTA  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5